genome.fa.s15136.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015136.1 Kokia drynarioides strain JFW-HI SEQ_130180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  601175

Tables:   1   2   3   

This is table  2  of  3  ( 256 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322283--322329	22	2.1	22	100	0	94	36	12	17	34	1.87
331167--331195	14	2.0	15	93	6	51	48	3	6	41	1.47
331498--331570	20	3.5	20	76	9	74	5	6	23	64	1.39
331514--331580	20	3.2	20	74	16	57	4	5	23	65	1.34
331576--331692	23	5.2	23	73	13	100	13	6	11	68	1.38
331582--331721	43	3.0	45	85	9	176	12	7	14	66	1.43
331576--331681	12	9.3	12	65	12	53	13	6	12	67	1.39
331686--331745	20	2.8	21	70	12	50	10	5	21	63	1.44
332190--332252	20	3.0	20	84	8	90	7	1	19	71	1.19
333467--333501	12	2.9	12	86	0	52	22	31	0	45	1.53
335390--335463	23	3.2	23	78	3	85	10	6	13	68	1.37
335390--335465	24	3.2	23	80	9	82	10	6	14	68	1.38
335904--336007	22	4.7	22	79	8	104	6	7	18	67	1.38
335915--336007	45	2.1	45	87	4	134	6	7	17	68	1.34
336782--336827	22	2.1	22	83	0	56	28	8	8	54	1.61
342800--342850	22	2.2	23	89	6	77	19	7	7	64	1.44
342795--342914	61	2.0	61	96	0	222	25	9	10	55	1.62
342861--342911	22	2.2	23	86	6	68	21	9	3	64	1.40
343843--344019	81	2.2	81	82	6	200	16	18	12	51	1.76
352537--352582	15	3.2	15	80	17	53	0	19	0	80	0.71
352537--352579	11	3.9	11	79	11	52	0	20	0	79	0.74
353640--353679	19	2.0	21	85	9	57	7	42	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371355--371506	71	2.1	71	81	0	169	50	13	19	16	1.78
373046--373089	22	2.0	22	95	0	79	20	13	34	31	1.92
383693--383730	7	5.7	7	87	9	53	0	60	0	39	0.97
383693--383730	20	1.9	20	88	0	58	0	60	0	39	0.97
383696--383731	13	2.7	13	86	4	54	0	61	0	38	0.96
386966--387005	21	2.0	21	85	9	57	42	12	7	37	1.71
388926--388970	22	2.1	21	83	4	54	26	0	4	68	1.08
397341--397691	30	11.9	28	75	11	206	37	4	21	36	1.74
397323--397484	59	2.7	58	81	9	159	39	6	20	33	1.77
397381--397692	29	10.6	29	77	12	262	37	3	22	36	1.72
397381--397700	59	5.4	59	80	8	321	36	3	22	37	1.71
399503--399547	17	2.6	17	89	0	63	42	2	2	53	1.25
399503--399571	6	11.5	6	73	11	61	49	1	2	46	1.25
406671--406732	28	2.2	29	82	5	74	45	27	4	22	1.73
413472--413525	28	1.9	28	100	0	108	29	16	31	22	1.96
414270--414319	21	2.4	22	80	16	61	30	16	28	26	1.96
414910--414935	13	2.0	13	100	0	52	46	0	15	38	1.46
415921--415984	30	2.2	29	91	5	110	37	20	6	35	1.78
416149--416203	23	2.4	22	100	0	92	45	9	3	41	1.53
416139--416203	23	2.8	23	90	2	76	47	9	3	40	1.51
421740--421769	13	2.2	14	94	5	53	43	0	0	56	0.99
421740--421784	23	2.0	23	91	4	74	37	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424175--424211	3	12.3	3	100	0	74	35	0	0	64	0.94
425366--425414	25	2.0	24	84	11	64	46	2	0	51	1.12
426027--426069	20	2.2	19	87	4	59	41	0	0	58	0.98
426126--426189	30	2.2	29	79	15	71	39	6	3	51	1.43
427682--427725	21	2.1	21	82	0	52	29	11	2	56	1.46
427947--427987	19	2.2	19	86	0	55	41	24	4	29	1.75
429250--429387	5	27.8	5	73	15	90	46	16	3	33	1.65
429254--429379	20	5.8	20	78	16	119	47	15	3	32	1.64
429277--429383	25	4.5	25	83	11	134	47	15	3	32	1.64
430055--430292	49	4.9	49	80	8	243	31	34	16	17	1.92
430055--430292	97	2.4	97	80	9	259	31	34	16	17	1.92
434248--434717	235	2.0	233	94	0	832	40	10	19	29	1.85
436372--436537	41	4.1	40	83	3	172	39	10	27	21	1.87
436378--436569	82	2.3	81	79	4	197	38	11	28	22	1.89
438040--438160	42	2.9	42	80	4	120	42	14	22	20	1.87
457573--457638	31	2.2	29	84	7	80	39	3	4	53	1.37
457681--457759	31	2.6	30	78	7	79	48	8	3	39	1.53
457837--457973	58	2.4	57	79	3	148	25	13	10	49	1.75
458385--458430	24	2.0	24	86	4	67	41	15	17	26	1.88
460390--460459	23	3.0	23	74	2	68	40	15	12	31	1.85
460553--460618	12	5.5	12	72	13	64	42	16	22	18	1.89
460550--460630	24	3.4	24	100	0	162	43	16	20	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460565--460633	12	5.8	12	73	13	70	40	17	20	21	1.91
461812--461862	16	3.1	16	78	13	50	78	15	0	5	0.93
461848--461923	21	3.5	21	78	3	71	65	19	6	7	1.41
461891--461966	33	2.3	33	86	6	102	71	23	2	2	1.12
461925--461966	20	2.0	21	86	4	59	76	23	0	0	0.79
461913--461966	11	5.0	10	82	13	63	75	24	0	0	0.80
472868--472907	20	2.0	21	85	5	55	32	2	2	62	1.22
481174--481260	19	4.5	19	78	8	79	81	1	14	2	0.85
481190--481256	31	2.2	31	88	0	98	80	1	17	0	0.79
481173--481262	12	7.7	11	73	16	65	81	1	15	2	0.86
482346--482617	51	5.3	51	89	0	382	29	22	14	33	1.94
489336--489573	51	4.6	51	85	5	302	30	23	12	32	1.92
491555--491973	49	8.6	48	69	9	222	34	18	30	16	1.93
491511--491918	195	2.1	195	81	3	464	35	18	30	16	1.93
492454--492517	27	2.2	28	81	13	69	35	3	1	59	1.23
492480--492522	11	3.8	11	80	17	52	32	2	0	65	1.06
494873--495117	96	2.6	93	86	3	337	33	16	26	23	1.96
495268--495551	76	3.8	76	90	0	435	40	17	19	22	1.91
497158--497212	29	1.9	28	85	3	74	32	20	9	38	1.84
497638--497685	24	1.9	24	83	8	60	25	8	8	58	1.55
498583--498644	27	2.2	27	82	5	70	66	3	4	25	1.27
498680--498756	38	1.9	38	82	12	93	63	2	5	28	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498692--498760	19	3.6	19	74	5	59	65	1	4	28	1.21
498660--498897	116	2.1	112	80	9	268	60	5	4	30	1.39
499484--499525	2	21.0	2	100	0	84	50	0	0	50	1.00
509145--509192	20	2.3	20	83	13	62	29	2	25	43	1.66
509145--509196	21	2.5	21	87	9	72	26	1	25	46	1.63
509164--509205	21	2.0	21	86	9	59	30	0	21	47	1.51
511743--511825	27	3.3	26	85	8	100	67	0	0	32	0.91
511980--512012	11	3.1	11	91	4	50	54	0	27	18	1.44
517644--517682	15	2.5	15	88	12	53	69	0	2	28	1.02
518344--518409	19	3.5	18	72	15	53	63	1	1	33	1.13
518627--518651	12	2.1	12	100	0	50	76	0	0	24	0.80
518671--518838	9	17.6	10	68	21	67	31	3	2	62	1.25
518676--518783	56	1.9	56	82	3	135	30	2	2	63	1.22
518741--518838	9	10.4	9	75	18	85	31	4	1	63	1.20
518741--518852	28	4.0	28	73	17	81	31	5	0	62	1.24
518867--518911	24	1.9	23	86	4	63	28	2	2	66	1.15
518879--518923	16	2.8	16	86	3	54	22	4	2	71	1.15
519857--519900	24	1.9	24	86	9	65	68	4	0	27	1.09
523297--523383	27	3.0	28	73	10	77	63	4	4	27	1.34
524054--524078	9	2.8	9	100	0	50	36	0	0	64	0.94
525280--525367	45	2.0	45	100	0	176	32	13	15	37	1.87
527572--527601	15	2.0	15	93	0	51	16	43	0	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537396--537888	58	8.7	58	76	8	386	32	22	15	30	1.94
537396--537488	29	3.2	29	69	11	82	36	26	9	26	1.88
537645--537750	29	3.6	29	67	20	76	27	25	14	33	1.94
537572--537888	174	1.8	175	84	4	444	31	22	15	31	1.94
541468--541530	9	6.6	10	74	20	55	31	3	1	63	1.19
541617--541662	9	4.9	10	80	19	55	30	0	0	69	0.89
541621--541663	10	4.4	9	78	16	50	27	0	0	72	0.85
541702--541748	18	2.4	20	82	13	62	46	0	0	53	1.00
542672--542704	17	1.9	18	88	11	52	54	6	0	39	1.25
542685--542753	33	2.2	31	82	7	77	57	2	1	37	1.22

Tables:   1   2   3