Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015136.1 Kokia drynarioides strain JFW-HI SEQ_130180, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  601175

Tables:   1   2   3   

This is table  3  of  3  ( 256 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
543880--543925
20
2.3
20
85
7
58
34
0
4
60
1.16
549426--549472
25
2.0
23
83
8
58
27
2
4
65
1.22
549435--549530
32
3.0
31
83
8
106
28
5
7
59
1.46
549448--549523
31
2.4
31
84
4
98
25
6
6
61
1.45
551725--551769
23
1.9
24
86
4
65
51
4
4
40
1.42
564606--564638
13
2.6
13
95
4
59
18
6
0
75
1.00
564618--564657
19
2.1
19
86
9
55
20
10
0
70
1.16
569534--569592
21
2.8
21
79
5
66
27
11
27
33
1.92
573885--573934
25
2.0
25
100
0
100
32
28
24
16
1.96
577379--577414
15
2.4
15
90
0
54
5
36
11
47
1.63
580627--580904
138
2.0
138
97
0
529
26
20
17
34
1.96
584656--584697
21
2.0
21
100
0
84
23
33
4
38
1.76
586633--586706
21
3.5
22
78
8
75
29
13
25
31
1.94
589578--589614
18
2.0
19
89
5
58
72
5
0
21
1.04
591040--591134
50
1.9
50
95
0
172
40
21
10
28
1.86
600352--600382
16
1.9
16
93
0
53
70
0
0
29
0.87

Tables:   1   2   3

The End!