genome.fa.s15153.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015153.1 Kokia drynarioides strain JFW-HI SEQ_130197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  800050

Tables:   1   2   3   

This is table  1  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21--68	12	3.7	12	77	20	51	41	10	0	47	1.37
31--65	17	2.1	16	89	5	52	48	8	0	42	1.33
21--78	28	2.1	28	83	0	71	43	12	0	44	1.41
3981--4053	39	1.9	39	91	5	123	41	16	13	28	1.87
3939--4161	97	2.3	94	82	6	261	35	17	19	27	1.94
4158--4288	57	2.3	56	83	11	151	38	17	17	26	1.92
17836--17867	2	16.5	2	93	6	57	50	0	0	50	1.00
18038--18105	32	2.1	32	84	13	86	35	1	0	63	1.04
21607--21653	21	2.2	21	92	0	76	44	14	10	29	1.79
21614--21658	21	2.1	21	100	0	90	40	13	11	35	1.80
27702--27767	24	2.8	24	72	9	71	30	27	16	25	1.97
30657--30806	80	1.9	80	88	2	230	30	15	20	34	1.94
31258--31379	48	2.6	47	88	2	156	55	14	7	22	1.64
32314--32365	21	2.5	21	87	12	72	32	25	13	28	1.93
36781--36843	24	2.6	24	82	7	74	31	20	20	26	1.98
40541--40629	24	3.7	24	78	1	97	29	24	19	26	1.98
47948--48165	51	4.3	50	79	11	230	37	13	12	36	1.83
47948--48171	101	2.2	102	84	6	287	37	12	12	36	1.82
48632--48746	36	3.2	36	85	4	117	40	22	12	25	1.88
49243--49299	27	2.1	27	86	0	78	64	7	12	15	1.47
49959--49991	17	1.9	17	88	11	50	27	0	6	66	1.15
50417--50551	48	2.8	48	85	0	189	26	8	14	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53459--53627	83	2.0	83	97	0	320	20	15	18	46	1.84
60937--60978	21	2.0	21	81	9	50	64	0	26	9	1.24
62050--62191	47	2.9	49	81	10	182	39	12	11	36	1.79
62057--62238	50	3.7	48	78	12	165	36	13	11	37	1.81
65117--65171	28	2.0	28	88	0	83	20	27	20	32	1.97
70468--70494	13	2.1	13	100	0	54	55	7	14	22	1.64
72952--73005	24	2.2	25	87	9	85	40	20	18	20	1.91
72960--73013	24	2.2	24	93	0	90	35	24	20	20	1.96
73631--73713	28	3.0	28	85	0	121	20	30	18	31	1.96
78940--79067	31	4.3	31	70	21	87	24	17	11	46	1.81
79303--79444	59	2.4	61	87	3	198	45	11	18	24	1.82
98247--98290	22	2.0	22	95	0	79	31	20	18	29	1.96
115191--115217	12	2.2	12	100	0	54	25	11	11	51	1.70
116052--116083	11	2.9	11	95	0	55	50	9	15	25	1.74
119620--119660	15	2.8	15	85	3	57	31	4	19	43	1.72
124550--124698	74	2.0	74	100	0	298	29	10	28	31	1.91
127177--127202	3	8.7	3	100	0	52	30	0	0	69	0.89
127823--127926	51	2.0	51	98	0	199	39	1	32	25	1.67
135106--135164	28	2.1	28	81	6	66	66	1	0	32	1.02
135810--135860	25	2.1	25	88	3	77	37	7	7	47	1.62
142133--142315	66	2.7	66	87	4	251	27	26	21	24	1.99
144474--144513	2	19.5	2	89	5	62	2	47	2	47	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145940--145980	19	2.2	19	86	4	57	39	0	4	56	1.21
151865--151924	31	1.9	31	89	0	93	50	8	8	33	1.63
153840--153879	21	1.9	21	84	0	53	20	20	10	50	1.76
156523--156557	3	11.7	3	100	0	70	68	0	0	31	0.90
160019--160057	16	2.8	13	79	20	51	28	20	10	41	1.85
162592--163186	101	5.9	99	77	5	475	37	17	18	26	1.93
162931--163101	50	3.4	49	73	10	148	40	19	15	23	1.90
162931--163126	51	3.9	51	75	8	152	39	18	16	25	1.91
162592--163136	202	2.7	202	82	4	708	37	17	18	26	1.93
165084--165159	27	2.6	27	75	25	75	22	2	2	72	1.10
165080--165168	11	8.5	10	72	20	60	22	3	2	71	1.11
165331--165398	9	7.9	9	69	9	52	30	2	2	63	1.24
165333--165398	17	3.8	18	74	9	66	31	3	3	62	1.26
165333--165409	25	3.0	24	79	9	82	29	3	5	61	1.36
168086--168191	52	2.0	52	100	0	212	37	11	18	32	1.87
172373--172431	31	1.9	31	96	0	109	28	25	10	35	1.89
182416--182631	56	3.9	56	84	3	294	25	16	24	33	1.95
183329--183600	50	5.4	51	71	9	191	39	19	16	25	1.91
183140--183448	152	2.0	153	81	3	363	35	18	19	26	1.95
183272--183659	202	1.9	202	84	3	512	38	19	17	25	1.93
183242--183690	101	4.4	101	79	5	442	37	18	17	26	1.93
185542--185627	11	8.0	10	75	21	61	22	3	2	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185542--185605	33	1.9	34	87	9	96	23	1	3	71	1.08
185560--185622	14	4.3	15	77	20	62	23	3	1	71	1.09
185791--185860	9	8.1	9	70	9	56	31	2	2	62	1.24
185793--185861	17	4.0	18	74	9	72	31	4	2	60	1.31
185793--185869	25	3.0	24	77	9	73	31	3	5	59	1.37
186618--186709	45	2.0	46	80	2	105	44	11	10	32	1.76
187618--187678	31	2.0	31	83	0	77	47	6	11	34	1.66
189687--189747	29	2.1	29	81	6	70	44	8	19	27	1.79
190973--191250	56	5.0	56	87	1	380	24	16	24	33	1.96
191068--191158	28	3.3	27	66	23	71	23	13	29	34	1.92
195139--195429	53	5.5	53	84	1	284	34	23	16	25	1.95
211668--211700	13	2.5	13	100	0	66	54	6	6	33	1.50
235582--235630	21	2.3	22	96	3	91	48	16	12	22	1.79
236087--236138	21	2.4	21	80	3	59	28	17	1	51	1.56
236535--236598	17	3.8	17	93	0	110	35	1	3	59	1.23
238400--238777	30	12.8	29	77	6	285	33	24	3	38	1.72
238409--238777	88	4.1	89	79	4	318	33	23	3	39	1.72
250848--251016	78	2.2	78	86	0	239	23	30	19	26	1.98
250806--250991	39	4.8	39	77	2	185	24	29	20	25	1.99
250806--251049	117	2.1	117	83	4	296	24	31	19	24	1.98
251525--251597	17	4.3	17	91	0	119	39	1	2	56	1.22
251525--251597	34	2.1	34	97	0	137	39	1	2	56	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251533--251597	6	11.3	6	74	9	55	38	1	3	56	1.24
260522--260576	21	2.4	24	88	8	80	40	21	9	29	1.84
273504--273676	81	2.1	81	82	2	204	24	15	28	31	1.96
273698--273772	26	2.9	26	86	2	98	30	17	24	28	1.97
273704--273782	25	3.1	25	85	1	95	26	16	25	31	1.96
273729--273794	25	2.6	25	85	2	87	22	18	25	33	1.97
273729--273999	135	2.0	135	96	0	497	28	17	23	30	1.97
279839--279964	47	2.7	45	74	8	135	37	20	15	26	1.93
280288--280317	15	1.9	16	93	6	53	53	0	0	46	1.00
284902--285046	49	2.9	49	82	5	175	36	25	11	26	1.89
291159--291183	6	4.2	6	100	0	50	36	32	0	32	1.58
305193--305240	19	2.5	20	75	21	50	45	0	0	54	0.99
305330--305706	97	3.7	99	80	10	372	38	3	5	52	1.41
305521--305712	107	1.8	106	90	3	314	38	2	5	53	1.37
305304--305706	204	2.0	201	84	6	528	38	3	5	53	1.40
307118--307160	18	2.4	18	92	0	68	51	11	30	6	1.65
308466--308496	15	2.0	15	93	6	53	80	0	19	0	0.71
313861--313923	12	5.1	12	73	21	58	50	0	1	47	1.10
314036--314083	22	2.0	26	84	15	68	43	8	10	37	1.69
321759--321798	20	2.0	20	85	5	53	60	7	5	27	1.45
324537--324561	13	1.9	13	100	0	50	40	0	12	48	1.40
324835--325107	30	9.1	29	79	7	224	35	25	2	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324838--325107	61	4.5	60	80	6	253	35	24	2	37	1.69
324867--325044	91	2.0	89	85	2	239	37	21	1	39	1.61
328652--329003	162	2.2	161	86	2	465	36	16	21	24	1.94
328814--329257	209	2.1	210	86	1	631	37	17	21	23	1.94
328493--329213	371	1.9	371	86	2	1027	37	16	22	23	1.94
329060--329391	123	2.7	124	83	2	400	36	17	23	22	1.95
328899--329590	333	2.1	334	86	2	962	36	17	22	23	1.95
329187--330637	209	7.0	209	87	2	1764	37	16	22	23	1.94
331894--332250	30	12.0	30	80	10	342	37	23	0	38	1.61
331894--332250	59	6.0	60	83	6	386	37	23	0	38	1.61

Tables:   1   2   3