genome.fa.s15153.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015153.1 Kokia drynarioides strain JFW-HI SEQ_130197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  800050

Tables:   1   2   3   

This is table  2  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331891--332251	89	4.0	88	81	7	370	36	24	0	37	1.62
333564--333640	40	2.0	41	89	7	124	33	9	10	46	1.70
334806--334871	21	3.4	19	78	17	66	68	4	3	24	1.23
334820--334871	19	2.7	20	79	11	63	73	3	1	21	1.10
334909--335104	47	4.1	47	72	19	142	60	3	2	34	1.26
335034--335088	20	2.8	20	81	5	60	60	3	1	34	1.25
334908--335105	9	21.0	9	70	16	100	60	3	2	34	1.26
334910--335104	46	4.1	46	73	14	132	60	3	2	33	1.25
335668--335709	20	2.0	21	86	4	59	38	0	2	59	1.10
335687--335716	16	1.9	15	93	6	51	36	0	0	63	0.95
335660--335731	29	2.5	29	82	10	87	36	0	1	62	1.04
335653--335746	9	10.2	9	69	16	59	32	1	2	63	1.13
335699--335754	19	2.9	19	80	17	62	28	0	3	67	1.07
336028--336172	72	2.0	72	100	0	290	44	4	11	40	1.59
339769--339822	26	2.1	26	100	0	108	35	3	16	44	1.66
340029--340059	2	15.5	2	93	0	53	3	0	45	51	1.17
341047--341089	21	2.0	21	100	0	86	34	9	13	41	1.77
341415--341538	54	2.3	54	84	2	151	29	21	27	21	1.99
341452--341558	54	2.0	54	81	7	128	27	22	28	21	1.99
344302--344524	94	2.4	94	86	5	294	27	19	22	30	1.98
349535--349771	94	2.6	94	83	3	284	28	16	24	30	1.96
352372--352559	70	2.7	68	78	7	164	34	20	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352511--352664	69	2.2	70	87	1	211	33	20	22	24	1.97
353981--354005	6	4.2	6	100	0	50	20	0	0	80	0.72
360786--362696	955	2.0	951	90	1	3026	34	14	21	29	1.93
363630--363671	18	2.3	18	88	8	59	35	19	23	21	1.96
365789--365864	11	6.8	11	70	24	52	53	1	1	43	1.17
368857--368889	6	5.7	6	89	7	50	84	12	3	0	0.72
369138--369180	18	2.4	18	80	7	52	51	0	2	46	1.13
374847--374903	16	3.5	16	79	9	62	38	5	0	56	1.22
377199--377277	9	9.2	9	68	25	55	54	0	0	45	0.99
377191--377279	20	4.5	20	69	18	78	52	0	1	46	1.07
377201--377301	30	3.4	30	73	20	104	55	0	0	43	1.06
377198--377310	59	1.9	60	89	5	176	53	0	0	46	1.06
378289--378350	9	7.8	9	68	24	50	51	0	0	48	1.00
378292--378327	16	2.1	18	90	10	58	50	0	0	50	1.00
378287--378348	20	3.2	19	72	25	58	54	0	0	45	0.99
378264--378348	38	2.2	39	89	2	136	51	0	0	48	1.00
386194--386228	5	6.8	5	87	6	52	80	0	17	2	0.84
386193--386230	11	3.5	11	82	3	51	78	0	18	2	0.86
386193--386244	17	3.2	17	81	13	56	76	0	21	1	0.87
386109--386279	93	1.9	90	85	6	236	64	6	19	9	1.45
387103--387156	13	4.3	12	84	15	58	81	0	18	0	0.69
387112--387153	10	4.6	9	86	13	59	80	0	19	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387104--387156	16	3.3	16	80	15	65	81	0	18	0	0.70
388130--388506	49	7.7	49	72	4	285	37	15	24	22	1.92
388133--388508	98	3.8	98	79	3	389	38	14	25	22	1.92
388746--389279	38	13.7	39	76	6	431	32	25	17	25	1.97
388742--389351	78	7.7	78	80	9	614	31	24	16	26	1.96
388746--389320	194	2.9	194	76	7	525	31	25	16	26	1.97
388746--389372	38	15.8	42	72	15	300	31	24	16	26	1.96
389295--389392	42	2.3	42	87	0	133	30	24	13	31	1.93
392650--392699	27	1.9	27	84	8	68	74	4	12	10	1.21
394935--394980	24	1.9	24	86	0	65	19	6	2	71	1.18
395242--395380	49	2.8	49	76	5	127	43	3	10	42	1.55
395169--395828	149	4.4	148	86	5	850	41	4	10	43	1.60
399842--400141	148	2.0	148	94	1	521	33	14	15	37	1.87
408169--408602	151	2.9	146	87	5	649	40	4	10	44	1.59
421567--421632	34	1.9	34	84	6	89	19	19	13	46	1.83
421575--421632	17	3.4	17	75	0	53	20	17	13	48	1.81
429789--429823	11	3.1	11	88	8	52	82	0	5	11	0.82
429789--429823	12	3.0	12	91	4	54	82	0	5	11	0.82
430225--430917	42	16.5	42	87	1	924	20	19	24	35	1.96
431828--431885	31	1.9	30	82	3	71	51	0	3	44	1.18
431747--432257	149	3.4	147	86	4	711	43	4	9	42	1.57
438959--438987	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441910--442125	110	2.0	111	87	4	312	31	26	10	31	1.90
442295--442326	12	2.5	13	95	5	57	0	15	0	84	0.63
451879--451903	12	2.1	12	100	0	50	40	16	8	36	1.77
472812--472846	18	1.9	18	94	0	61	11	31	5	51	1.61
474070--474108	20	2.0	20	85	5	53	30	7	12	48	1.69
478936--479181	53	4.6	53	83	2	296	27	15	21	34	1.94
486072--486369	53	5.6	53	86	0	382	26	15	22	35	1.94
487054--487110	21	2.7	21	88	0	78	26	15	24	33	1.95
505469--505520	25	2.1	25	81	0	59	46	9	17	26	1.79
518321--518345	13	1.9	13	100	0	50	24	16	12	48	1.79
522741--523198	144	3.1	144	78	10	482	45	3	8	43	1.50
523728--523784	21	2.7	21	81	10	71	19	7	1	71	1.17
523733--523778	16	2.8	17	83	6	58	19	8	2	69	1.25
524501--524525	3	8.3	3	100	0	50	68	0	0	32	0.90
525137--525332	101	1.9	101	84	11	261	21	5	8	63	1.43
525499--525544	15	3.1	14	84	3	56	21	2	6	69	1.22
525554--525595	21	2.0	22	90	4	68	23	0	2	73	0.94
525512--525669	72	2.2	72	82	6	178	20	8	4	66	1.36
530802--531203	42	9.5	42	85	4	524	23	17	21	37	1.94
546590--546620	10	3.1	10	95	0	53	48	19	29	3	1.64
549332--549385	22	2.5	22	90	0	90	33	20	5	40	1.76
552106--552415	153	2.0	153	100	0	620	40	21	7	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553466--553520	13	4.1	14	74	9	51	58	5	3	32	1.38
553477--553532	26	2.2	26	83	6	69	57	3	3	35	1.34
553713--553737	11	2.3	11	100	0	50	44	0	0	56	0.99
556304--556415	31	3.7	30	70	9	93	23	18	19	38	1.93
556358--556435	31	2.5	31	81	4	95	21	19	19	39	1.92
556463--556522	31	1.9	31	86	6	86	35	21	21	21	1.96
567829--567940	58	1.9	59	89	3	174	46	1	0	50	1.17
568129--568166	16	2.4	16	95	0	67	28	31	5	34	1.80
574286--574341	28	2.0	28	100	0	112	46	14	14	25	1.82
574918--574954	18	2.1	18	94	0	65	10	24	5	59	1.52
575262--575301	21	2.0	21	95	5	73	47	15	12	25	1.80
582246--582300	28	1.9	28	82	10	67	27	7	14	50	1.69
589873--589930	21	2.8	21	94	0	107	29	8	24	37	1.85
592840--592870	2	15.5	2	100	0	62	48	0	0	51	1.00
593610--593670	3	20.3	3	93	0	104	31	1	1	65	1.12
596327--596362	14	2.6	14	95	0	63	33	27	16	22	1.95
604312--604369	21	2.8	21	94	0	107	29	8	24	37	1.85
607279--607309	2	15.5	2	100	0	62	48	0	0	51	1.00
608049--608109	3	20.3	3	93	0	104	31	1	1	65	1.12
610766--610801	14	2.6	14	95	0	63	33	27	16	22	1.95
613594--613709	55	2.1	55	98	1	225	44	16	8	30	1.77
622118--622164	18	2.6	19	80	10	62	72	4	12	10	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622118--622164	19	2.6	18	78	18	53	72	4	12	10	1.25
622130--622171	18	2.3	18	84	8	50	78	2	11	7	1.04
629756--629865	50	2.2	50	79	6	116	35	16	21	26	1.94
629925--630051	40	3.2	40	73	12	136	32	25	18	23	1.97
629901--630088	78	2.4	79	90	0	297	32	26	17	24	1.96
629901--630109	78	2.7	77	86	3	283	32	26	15	25	1.96
636497--636605	41	2.6	42	76	2	105	19	23	27	29	1.98
636896--636936	12	3.4	12	83	10	57	51	21	0	26	1.48
642048--642086	14	2.8	13	79	20	51	30	20	7	41	1.80
644263--644313	19	2.6	19	76	11	59	80	0	15	3	0.86

Tables:   1   2   3