genome.fa.s15153.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015153.1 Kokia drynarioides strain JFW-HI SEQ_130197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  800050

Tables:   1   2   3   

This is table  3  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644262--644310	26	2.0	25	88	8	73	79	0	16	4	0.88
672479--672542	30	2.2	29	88	5	101	40	4	14	40	1.66
672489--672551	30	2.1	31	96	3	119	39	3	14	42	1.61
673579--673620	21	2.0	22	85	4	59	73	7	0	19	1.05
673870--673968	47	2.1	46	83	9	119	67	8	4	20	1.33
673964--673992	3	9.7	3	100	0	58	68	0	0	31	0.89
674699--674783	27	3.1	27	84	0	107	14	14	37	34	1.86
675312--675392	26	3.2	26	82	3	101	27	17	22	33	1.96
684267--684307	17	2.3	18	87	4	57	19	19	12	48	1.80
685287--685352	26	2.5	26	80	0	69	24	16	24	34	1.95
685310--685366	26	2.2	26	90	0	87	26	15	22	35	1.94
688402--688675	43	6.5	43	91	2	378	35	12	24	27	1.91
688706--688787	40	2.0	40	83	0	101	41	9	24	24	1.85
695700--695847	43	3.5	43	87	1	210	36	11	24	27	1.90
700334--700383	17	2.9	17	81	0	64	44	10	24	22	1.83
722437--722487	18	2.8	17	79	8	57	17	5	1	74	1.11
726543--726572	12	2.5	12	94	0	51	26	13	33	26	1.93
727547--727600	27	2.0	27	96	0	99	33	9	18	38	1.83
728990--729029	19	2.1	19	90	0	62	32	12	22	32	1.91
729056--729148	35	2.7	35	88	3	134	35	10	24	29	1.89
730877--730951	25	3.0	25	90	0	87	32	25	20	22	1.98
733155--733220	29	2.3	28	78	2	78	69	0	1	28	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
733264--733323	28	2.1	29	78	9	70	70	3	3	23	1.18
733560--733629	28	2.4	29	81	9	81	41	2	0	55	1.14
733558--733629	19	3.8	19	67	20	51	40	2	0	56	1.13
736908--737041	67	2.0	67	98	0	259	23	29	14	32	1.95
740393--740426	17	2.1	16	88	5	50	26	8	0	64	1.22
742141--742189	22	2.2	22	96	0	89	51	16	18	14	1.77
751301--751350	20	2.7	18	75	24	59	50	4	2	44	1.32
751313--751361	25	1.9	26	84	12	66	48	6	2	42	1.39
751333--751409	37	2.1	37	81	13	88	50	5	1	42	1.32
754107--754172	33	2.0	34	93	3	116	37	21	15	25	1.92
756650--756929	41	6.9	41	79	7	239	40	15	23	20	1.90
756659--756929	82	3.3	81	77	5	271	40	14	24	20	1.90
756659--756879	122	1.8	123	87	1	336	41	14	24	19	1.89
758361--758449	40	2.2	40	83	2	106	41	20	19	19	1.91
759353--759387	16	2.2	16	100	0	70	25	8	25	40	1.84
761045--761156	34	3.0	34	73	20	116	49	7	0	42	1.36
764614--764639	13	2.0	13	100	0	52	30	23	7	38	1.83
765658--765695	20	1.9	20	94	0	67	23	10	5	60	1.50
767295--767333	15	2.6	15	84	11	53	56	0	10	33	1.33
768347--768434	43	2.0	43	97	0	167	42	10	13	34	1.78
768645--768742	43	2.3	43	81	0	124	30	16	25	27	1.96
775800--775839	21	2.0	20	85	5	53	25	7	2	65	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777785--777819	18	1.9	18	88	0	52	8	28	5	57	1.52
780661--780696	17	2.1	17	89	0	54	52	0	5	41	1.24
780973--781010	20	2.0	20	89	5	60	7	23	28	39	1.83

Tables:   1   2   3

The End!