genome.fa.s15154.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015154.1 Kokia drynarioides strain JFW-HI SEQ_130198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822009

Tables:   1   2   3   

This is table  2  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387755--387807	21	2.5	21	78	9	63	7	30	9	52	1.61
388680--388740	26	2.4	24	78	10	68	60	1	4	32	1.28
395245--395269	12	2.1	12	100	0	50	24	24	24	28	2.00
396050--396080	16	1.9	16	93	0	53	22	16	0	61	1.34
398898--398926	3	9.7	3	100	0	58	0	0	31	68	0.89
400196--400238	18	2.4	18	96	0	77	11	23	41	23	1.87
400486--400534	20	2.3	21	82	10	55	48	8	2	40	1.44
401512--401670	75	2.1	75	89	2	239	47	7	15	29	1.72
401642--401679	19	2.0	20	84	5	51	47	7	7	36	1.62
401648--401915	139	1.9	137	87	1	392	43	7	6	43	1.57
405450--405505	5	11.4	5	77	11	62	76	3	17	1	1.01
405453--405500	24	2.0	23	88	4	69	77	4	16	2	1.03
410377--410434	17	3.4	17	75	0	53	48	13	17	20	1.81
410377--410442	34	1.9	34	82	11	82	48	15	16	19	1.81
420444--420507	29	2.2	29	100	0	128	39	15	25	20	1.92
428419--428513	30	3.2	30	95	0	172	58	14	2	24	1.47
429486--429760	138	2.0	138	91	1	444	40	10	6	43	1.63
431746--431778	17	1.9	17	93	0	57	24	18	27	30	1.98
435450--435971	261	2.0	262	93	1	895	30	26	7	35	1.85
445125--445299	52	3.4	52	85	3	235	28	14	21	35	1.93
445013--445237	114	2.0	112	89	1	342	26	16	23	34	1.95
445125--445341	104	2.1	103	80	6	233	29	15	20	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446035--446086	21	2.5	21	83	0	59	28	19	19	32	1.96
455653--455686	15	2.3	15	94	0	59	47	0	50	2	1.16
464594--464781	52	3.6	52	85	4	238	28	14	22	34	1.94
464847--464888	19	2.2	19	95	0	75	33	7	9	50	1.62
468897--468946	6	8.0	6	80	14	57	18	0	4	78	0.91
468900--468931	10	3.3	10	91	8	57	18	0	0	81	0.70
468899--468932	15	2.3	15	90	10	52	17	0	0	82	0.67
468897--468958	31	2.0	32	84	9	83	16	1	4	77	1.02
469476--469503	13	2.2	13	100	0	56	21	14	14	50	1.78
470419--470451	11	3.0	11	90	0	57	30	0	0	69	0.88
470419--470451	6	5.8	6	86	13	52	30	0	0	69	0.88
475169--475242	37	2.0	37	94	0	130	36	14	14	33	1.88
480804--481092	144	2.0	144	96	0	533	38	14	16	30	1.89
483231--483322	31	3.0	31	86	0	130	32	11	17	38	1.86
484784--484966	38	4.9	38	78	6	178	34	30	22	12	1.91
484955--485054	37	2.7	37	88	0	146	29	31	19	21	1.97
486834--486868	15	2.3	16	90	9	56	45	5	20	28	1.73
486815--486870	15	3.6	15	74	13	51	46	7	19	26	1.76
489260--489367	54	2.0	54	100	0	216	27	14	22	35	1.93
491054--491107	26	2.1	26	100	0	108	31	7	27	33	1.84
494180--494221	22	2.0	21	90	9	68	38	9	19	33	1.84
494225--494272	24	2.0	24	91	0	78	25	12	25	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499049--499088	17	2.4	17	91	0	62	27	7	7	57	1.53
499047--499095	18	2.8	17	90	6	71	32	8	6	53	1.55
502106--502176	37	2.0	35	86	10	99	39	1	2	56	1.23
502106--502212	12	9.4	11	70	17	51	38	2	3	55	1.33
503781--503827	21	2.2	21	96	0	85	23	12	17	46	1.82
506640--506693	27	2.0	26	92	3	90	11	18	11	59	1.60
507205--507279	20	3.8	20	80	5	80	49	12	6	32	1.66
507198--507278	19	4.0	20	77	8	74	49	11	6	33	1.63
517017--517148	65	2.0	65	100	0	264	41	15	15	28	1.87
517231--517272	21	2.0	21	90	0	66	30	30	9	28	1.89
521578--521623	21	2.3	21	88	7	69	60	2	4	32	1.28
538713--538758	17	2.6	17	80	19	58	34	2	4	58	1.30
538720--538758	18	2.2	18	90	9	62	30	2	5	61	1.31
539853--540009	80	2.0	80	85	0	215	23	20	26	29	1.99
541006--541156	75	2.0	75	88	0	221	25	10	31	32	1.90
545760--545805	20	2.3	20	78	17	51	47	0	2	50	1.13
550728--551418	101	6.9	101	76	4	531	26	17	18	37	1.93
550728--550946	50	4.4	49	72	6	161	26	17	18	36	1.94
550812--551363	202	2.7	202	82	2	628	27	18	17	36	1.93
550776--551364	303	1.9	303	80	6	674	27	17	17	36	1.93
557784--557909	37	3.4	37	83	2	146	15	18	30	34	1.92
573072--573131	29	2.1	29	90	6	95	66	10	10	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582788--582819	14	2.3	14	94	0	55	50	0	31	18	1.48
585567--585612	21	2.2	21	84	7	58	69	4	4	21	1.24
585645--585675	16	1.9	16	93	0	53	61	3	12	22	1.46
587771--588337	101	5.6	102	77	4	540	28	18	17	35	1.93
587711--588233	51	10.4	51	69	10	218	28	19	17	34	1.94
587618--588245	151	4.1	151	73	7	387	28	18	17	35	1.94
587792--588283	203	2.4	202	89	2	754	29	19	16	34	1.94
591602--591659	5	11.0	5	82	15	64	0	17	0	82	0.66
591602--591661	11	5.7	10	80	9	66	0	16	0	83	0.65
597491--597720	115	2.0	115	98	0	442	23	26	9	40	1.85
617372--617410	21	1.9	21	89	5	62	12	12	7	66	1.43
620293--620341	18	2.6	18	78	18	55	73	0	22	4	1.00
620301--620349	25	2.0	26	84	15	68	75	0	20	4	0.96
620293--620349	12	4.5	12	76	14	53	73	0	22	3	0.98
629598--629644	24	2.0	24	84	16	62	14	8	6	70	1.32
631348--631394	15	2.8	17	81	15	62	63	2	34	0	1.06
631798--631835	17	2.2	17	90	0	58	23	15	7	52	1.69
644669--644719	23	2.3	22	80	10	59	72	5	1	19	1.15
644666--644738	33	2.2	33	82	4	94	69	5	4	20	1.25
644932--645035	8	12.8	8	74	17	81	68	0	6	24	1.20
644990--645030	17	2.4	17	95	0	73	75	2	0	21	0.92
644933--645049	61	1.9	60	87	5	173	65	0	9	23	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645243--645287	22	2.1	21	88	8	65	73	0	8	17	1.08
649014--649058	23	2.0	23	82	8	56	71	8	0	20	1.12
649242--649314	27	2.8	29	72	19	79	69	0	2	27	1.02
649246--649311	24	2.7	24	80	15	73	69	0	3	27	1.03
649269--649315	19	2.5	19	76	13	53	70	0	2	27	0.99
649518--649561	22	2.1	21	87	8	63	72	0	9	18	1.10
658086--658230	33	4.4	34	66	21	94	37	3	3	55	1.34
658079--658260	98	1.9	98	90	2	294	35	4	3	55	1.40
658770--658806	13	2.6	15	87	8	51	16	32	27	24	1.96
658759--658806	15	3.1	15	75	16	53	16	31	29	22	1.96
660961--661000	21	2.0	21	85	5	55	42	15	17	25	1.88
674995--675037	15	2.7	15	86	13	52	2	16	0	81	0.79
675587--675649	17	3.6	17	82	2	54	52	12	15	19	1.74
676064--676102	15	2.6	15	91	0	60	0	33	0	66	0.92
677405--677508	50	2.1	51	81	5	122	38	10	13	37	1.79
698851--698894	19	2.4	19	88	11	65	4	2	11	81	0.92
706369--706437	34	2.0	34	83	5	86	24	24	8	42	1.83
707265--707358	28	3.4	28	89	0	125	37	26	8	27	1.85
708813--708858	24	1.9	24	90	0	74	71	0	4	23	1.03
708840--708883	23	1.9	23	86	9	63	77	0	6	15	0.97
712130--712159	14	2.1	14	93	0	51	70	3	6	20	1.25
712150--712182	11	3.0	11	90	0	57	63	3	0	33	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714257--714363	55	1.9	55	84	0	142	23	24	14	37	1.93
721954--721984	14	2.3	14	94	5	55	45	9	16	29	1.79
734993--735089	41	2.4	41	80	1	124	29	15	26	27	1.96
742953--743003	24	2.3	23	80	10	61	45	0	43	11	1.40
745281--745370	46	2.0	45	82	2	108	34	14	13	37	1.85
750032--750085	28	1.9	28	100	0	108	29	14	31	24	1.95
750738--750812	34	2.1	36	92	4	127	41	0	4	54	1.19
750735--750828	6	16.3	6	68	12	54	40	1	3	55	1.23
750735--750826	17	5.4	17	82	7	96	41	1	3	54	1.24
752735--752921	29	6.4	29	82	6	200	35	27	1	35	1.67

Tables:   1   2   3