genome.fa.s15154.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015154.1 Kokia drynarioides strain JFW-HI SEQ_130198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  822009

Tables:   1   2   3   

This is table  3  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752735--752983	57	4.3	58	76	11	237	33	27	2	36	1.72
752756--752952	86	2.3	85	86	6	265	33	27	2	36	1.71
752756--752983	86	2.6	87	81	11	256	32	28	3	36	1.73
753101--753139	15	2.8	14	81	11	53	17	5	5	71	1.23
765003--765127	39	3.2	39	76	13	139	26	27	20	25	1.99
765023--765149	39	3.3	39	75	12	152	29	28	15	26	1.96
764906--765174	78	3.4	78	86	3	317	25	27	19	27	1.99
765023--765166	39	3.7	39	75	10	150	29	27	17	25	1.97
765175--765352	39	4.6	39	76	9	184	25	32	19	22	1.97
765175--765353	77	2.3	78	82	0	216	25	32	18	22	1.97
765355--765594	117	2.1	117	83	1	302	25	29	16	28	1.97
765372--765595	39	5.7	39	72	10	161	25	28	17	29	1.97
766072--766182	17	6.5	17	84	2	141	38	0	4	55	1.26
766090--766182	6	16.2	6	72	12	79	40	1	2	55	1.19
766100--766161	23	2.7	23	80	14	74	38	0	3	58	1.15
767970--768198	59	3.9	57	79	9	169	34	25	4	35	1.76
767979--768319	29	11.8	29	76	8	230	34	25	4	36	1.76
768064--768285	85	2.6	84	78	7	225	34	24	5	35	1.79
768043--768285	57	4.2	56	82	5	238	34	24	5	35	1.78
769107--769136	12	2.5	12	100	0	60	40	20	6	33	1.78
793480--793508	14	2.0	15	93	6	51	75	0	6	17	1.01
794649--794751	52	2.0	52	81	7	120	7	14	47	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
794873--794959	20	4.3	20	94	2	140	19	35	12	32	1.89
794998--795058	20	3.0	20	83	4	70	16	32	18	32	1.93
808813--808860	2	24.0	2	95	0	87	50	2	0	47	1.12
809931--809968	12	2.8	13	84	15	51	2	28	0	68	1.03
815645--816219	287	2.0	289	91	2	926	20	20	19	39	1.93
816364--816407	18	2.4	18	88	0	61	25	18	20	36	1.95
818545--818985	52	8.4	52	89	2	609	36	23	14	24	1.93

Tables:   1   2   3

The End!