genome.fa.s15161.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015161.1 Kokia drynarioides strain JFW-HI SEQ_130205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  994981

Tables:   1   2   3   

This is table  1  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2325--2388	28	2.4	27	82	10	78	26	3	12	57	1.50
6784--6876	41	2.3	41	82	0	114	21	25	17	35	1.95
8791--8999	41	5.1	41	79	0	229	20	29	19	31	1.97
13110--13135	9	2.9	9	100	0	52	34	19	34	11	1.88
17917--17954	19	2.0	19	100	0	76	52	10	5	31	1.58
42528--42577	26	1.9	26	84	8	66	74	4	4	18	1.14
42528--42589	22	2.6	23	82	10	63	70	3	3	22	1.16
56279--56333	27	2.0	27	100	0	110	41	3	36	18	1.68
59201--59235	3	11.3	3	93	6	61	65	0	0	34	0.93
60611--60797	31	6.3	31	69	19	112	49	11	14	25	1.76
60691--60751	30	2.0	31	90	3	97	52	9	13	24	1.70
60611--60785	88	2.0	90	86	4	248	49	10	14	25	1.76
61938--61991	21	2.6	21	77	11	65	24	16	9	50	1.74
69534--69579	24	1.9	23	86	8	65	54	6	4	34	1.46
69644--69677	13	2.6	13	85	0	50	58	11	0	29	1.33
70574--70617	20	2.1	21	87	4	63	6	11	2	79	1.01
70593--70649	28	2.0	28	86	13	80	14	10	0	75	1.05
71805--71851	23	2.0	25	87	8	71	53	6	4	36	1.46
71922--71955	13	2.6	13	85	0	50	58	11	0	29	1.33
73337--73379	22	1.9	23	86	13	63	48	2	2	46	1.27
74033--74064	16	1.9	17	93	6	57	65	0	0	34	0.93
74566--74624	3	19.7	3	100	0	118	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74839--74868	6	5.0	6	95	0	51	50	3	46	0	1.18
76480--76513	7	5.0	7	96	3	61	73	0	0	26	0.83
79461--79486	3	8.7	3	100	0	52	65	0	0	34	0.93
82838--82886	14	3.1	16	80	17	57	51	0	2	46	1.12
86256--86309	24	2.3	24	81	12	67	35	22	1	40	1.65
88595--88634	19	2.0	20	85	4	55	42	0	12	45	1.42
88801--88852	15	3.5	15	71	10	52	36	7	1	53	1.41
93898--94032	23	6.0	23	81	6	105	40	23	24	11	1.87
93961--94032	22	3.2	22	94	2	117	41	26	20	11	1.86
96338--96371	14	2.2	16	90	10	54	50	2	0	47	1.16
96341--96371	16	1.9	16	93	0	53	48	3	0	48	1.17
97901--97973	32	2.3	33	84	11	100	46	21	6	24	1.76
101105--101158	19	2.9	19	81	8	58	22	0	3	74	0.98
103027--103075	23	2.2	22	80	16	57	32	10	16	40	1.82
104187--104215	10	2.7	11	89	10	51	75	0	24	0	0.80
106894--106939	25	1.9	25	86	8	69	32	2	6	58	1.36
120225--120256	16	2.0	16	93	0	55	25	18	3	53	1.59
122579--122657	19	4.2	19	85	6	99	40	17	21	20	1.91
126894--126936	19	2.3	19	91	0	68	67	9	11	11	1.42
137832--137964	53	2.5	53	82	4	153	30	14	18	36	1.91
162875--162926	25	2.1	25	100	0	104	34	23	15	26	1.94
165219--165248	3	10.0	3	100	0	60	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166029--166081	16	3.3	15	84	5	61	37	1	30	30	1.68
166038--166091	16	3.4	16	84	0	63	38	3	25	31	1.74
166029--166091	32	2.0	32	83	0	81	38	3	28	30	1.73
166274--166330	24	2.4	24	79	2	71	54	1	0	43	1.10
171007--171063	26	2.2	25	84	9	71	47	1	0	50	1.11
174825--174867	6	7.2	6	83	0	50	23	27	0	48	1.51
174825--174870	18	2.6	18	85	0	65	23	26	0	50	1.50
178906--178960	18	2.8	22	69	28	59	36	3	0	60	1.15
179332--179390	29	2.0	29	86	3	82	45	18	6	28	1.75
180403--180433	15	2.1	15	93	0	53	83	3	0	12	0.75
188187--188221	15	2.4	15	95	4	63	37	14	20	28	1.91
195369--196047	122	5.6	122	86	0	849	23	21	16	37	1.93
195793--195886	47	2.0	48	87	2	136	24	25	13	36	1.93
196291--196400	49	2.2	50	79	7	118	19	29	14	37	1.91
196378--196686	50	6.2	50	75	3	230	19	28	17	35	1.94
196505--196686	99	1.8	100	87	1	276	17	27	19	35	1.94
198632--198664	11	2.9	12	86	13	52	6	12	0	81	0.85
202722--203015	146	2.0	146	80	9	329	50	8	12	28	1.69
203854--203891	19	2.1	18	95	5	67	0	18	10	71	1.14
205244--205275	3	10.7	3	100	0	64	34	0	0	65	0.93
209350--209385	16	2.2	16	100	0	72	88	11	0	0	0.50
209351--209400	16	3.3	15	88	8	66	86	12	0	2	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209350--209400	9	5.7	9	80	17	61	86	11	0	1	0.66
216169--216222	19	3.0	18	84	10	67	14	5	1	77	1.03
216173--216236	32	2.0	32	84	6	85	15	4	3	76	1.08
228650--228719	21	3.3	21	71	0	59	34	22	8	34	1.85
235067--235291	41	5.4	41	85	2	252	28	25	9	37	1.87
235065--235291	83	2.7	83	87	4	314	27	25	9	37	1.86
235997--236039	3	14.3	3	100	0	86	67	0	32	0	0.91
236120--236167	22	2.2	21	77	3	51	35	14	0	50	1.44
239585--239618	16	2.2	15	94	5	59	73	0	0	26	0.83
239827--239911	19	4.8	17	72	21	68	41	0	1	57	1.06
239825--239930	18	5.9	18	72	15	69	41	0	1	56	1.10
240218--241518	441	3.0	437	81	6	1391	35	10	11	42	1.75
240732--241518	424	1.9	423	82	4	1001	35	10	11	42	1.75
244061--244130	31	2.3	31	82	5	88	41	10	10	38	1.72
244281--244428	73	2.0	73	96	0	269	38	20	8	33	1.82
245280--245314	17	2.1	17	89	10	54	17	11	0	71	1.14
249678--249716	18	2.1	18	85	4	51	38	17	12	30	1.88
250389--250429	20	2.0	20	85	0	55	56	7	7	29	1.54
255786--255829	16	2.6	17	82	10	56	47	27	0	25	1.52
256698--256872	33	5.3	33	75	9	142	30	1	43	24	1.64
256930--257028	51	1.9	51	87	0	144	31	10	23	35	1.88
261286--261319	15	2.3	15	89	0	50	29	8	23	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263027--263078	21	2.5	20	87	12	70	1	23	0	75	0.91
273450--273484	17	2.1	17	89	10	54	17	11	0	71	1.14
279305--279345	3	13.7	3	100	0	82	68	31	0	0	0.90
282493--282535	17	2.5	17	96	0	77	58	6	11	23	1.57
284614--284658	21	2.1	21	83	0	54	11	26	13	48	1.75
289620--289653	15	2.3	15	89	0	50	20	17	26	35	1.95
293884--293928	21	2.1	21	83	0	54	11	26	13	48	1.75
298890--298923	15	2.3	15	89	0	50	20	17	26	35	1.95
323192--323221	14	2.1	14	93	0	51	16	6	10	66	1.41
328867--328911	3	15.0	3	100	0	90	33	0	0	66	0.92
347170--347249	39	2.1	39	97	0	151	27	30	7	35	1.84
357902--357942	20	2.0	21	86	13	59	39	12	0	48	1.41
364002--364195	78	2.5	77	82	6	250	35	17	22	25	1.95
372130--372173	22	2.1	20	83	8	52	27	11	9	52	1.67
372770--372912	76	1.9	76	84	5	191	38	19	18	23	1.93
380725--380797	30	2.4	30	88	0	110	52	1	1	45	1.18
382177--382239	23	2.8	23	75	2	74	50	0	3	46	1.17
386316--386602	151	1.9	151	94	1	513	23	19	20	36	1.95
391709--391791	29	2.8	29	81	7	78	28	3	15	51	1.60
394390--394436	23	2.0	25	88	12	73	46	2	0	51	1.13
394390--394442	23	2.4	22	84	15	65	50	1	0	47	1.12
396258--396307	19	2.7	18	84	9	64	32	4	4	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396469--396505	19	2.0	18	94	5	65	48	2	0	48	1.15
399009--399063	28	2.0	28	82	13	69	45	7	20	27	1.77
399414--399606	66	2.9	66	93	0	323	26	16	32	25	1.96
406317--406374	24	2.4	24	85	5	73	27	25	24	22	2.00
410544--410629	24	3.6	23	81	12	84	29	24	22	24	1.99
412921--413024	52	2.0	52	100	0	208	25	19	23	32	1.97
413785--413873	34	2.6	34	85	7	117	31	22	11	34	1.89
413907--414035	38	3.4	38	85	0	150	24	29	13	31	1.94
413907--414035	19	6.8	19	78	0	123	24	29	13	31	1.94
413906--414035	57	2.3	57	84	5	156	24	29	14	31	1.95

Tables:   1   2   3