genome.fa.s15161.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015161.1 Kokia drynarioides strain JFW-HI SEQ_130205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  994981

Tables:   1   2   3   

This is table  2  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421449--421525	24	3.2	24	71	14	86	38	6	14	40	1.72
421439--421535	48	2.0	48	97	0	185	40	7	13	39	1.72
429148--429248	36	2.8	35	83	5	123	40	18	21	18	1.91
429818--429873	24	2.5	23	80	8	62	23	8	28	39	1.85
432647--432681	18	1.9	18	94	0	61	11	22	28	37	1.89
433236--433276	2	21.0	2	95	5	75	51	0	0	48	1.00
434391--434440	23	2.1	24	88	3	75	54	10	12	24	1.67
436340--436390	24	2.1	24	88	0	75	54	9	11	23	1.66
437532--437594	24	2.6	24	84	0	81	53	11	9	25	1.66
438583--438634	22	2.4	22	90	0	77	50	11	5	32	1.62
455933--455962	15	2.1	15	93	6	53	30	0	0	70	0.88
460171--460231	25	2.3	27	76	13	65	21	3	4	70	1.21
460204--460241	19	2.0	19	85	10	51	28	2	2	65	1.19
461150--461202	22	2.5	20	82	11	70	37	1	0	60	1.08
464945--465238	43	6.9	43	84	4	305	28	24	11	35	1.90
469993--470021	2	14.5	2	100	0	58	48	0	0	51	1.00
470025--470051	5	5.4	5	100	0	54	0	22	0	77	0.76
471014--471056	15	2.9	15	86	6	52	13	25	9	51	1.71
475955--475984	12	2.5	12	94	0	51	10	33	13	43	1.77
493620--493656	18	2.1	18	90	10	58	29	10	16	43	1.82
498753--498812	30	2.0	30	100	0	120	30	30	20	20	1.97
502424--502528	36	2.9	36	79	0	129	36	25	16	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502394--502528	72	1.9	72	88	0	207	35	22	17	25	1.95
519609--519673	22	3.0	22	76	17	64	29	21	27	21	1.99
526828--526895	21	3.1	22	76	15	70	29	22	27	20	1.98
530095--530125	9	3.4	9	90	0	53	32	9	41	16	1.80
530270--530342	23	3.2	23	84	0	101	12	10	24	52	1.71
530266--530371	46	2.3	47	82	8	128	11	8	25	54	1.64
531029--531065	19	1.9	19	94	0	65	37	21	29	10	1.88
531069--531169	20	5.1	20	78	9	89	31	21	33	12	1.91
531057--531169	40	2.8	40	91	0	163	31	21	32	14	1.93
533731--533769	17	2.3	17	90	0	60	46	25	12	15	1.81
549343--549371	2	14.5	2	100	0	58	51	0	0	48	1.00
552598--552651	27	2.0	27	85	3	74	27	18	24	29	1.98
562279--562673	39	10.2	39	67	15	154	23	31	19	25	1.98
562272--562479	78	2.7	77	85	2	265	24	34	17	24	1.96
562299--562521	78	2.9	78	84	3	218	25	31	17	25	1.97
562389--562650	117	2.2	116	79	9	289	22	29	20	27	1.99
562468--562701	78	3.0	78	80	4	215	23	28	20	27	1.99
563114--563149	17	2.1	18	89	5	56	30	0	2	66	1.06
563135--563217	17	4.9	17	75	11	73	37	2	4	55	1.34
563127--563217	34	2.7	34	84	3	121	37	2	4	56	1.32
563127--563230	34	3.1	33	79	8	111	41	1	3	52	1.30
564937--565156	28	7.6	28	69	14	112	33	26	3	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564937--565186	29	8.7	29	73	12	142	34	27	3	35	1.74
564976--565189	59	3.7	56	74	18	183	33	27	3	36	1.73
564981--565216	29	8.1	29	71	18	111	33	26	3	36	1.73
564966--565187	28	7.7	29	73	17	158	33	26	3	36	1.72
572501--572543	21	2.0	21	82	8	52	67	27	0	4	1.10
572534--572627	11	8.5	11	76	15	77	73	19	5	2	1.13
572616--572667	19	2.8	18	82	5	59	69	23	7	0	1.14
572560--572667	32	3.5	30	75	15	80	72	19	6	1	1.16
572515--572649	11	12.3	11	71	12	73	71	21	4	2	1.14
572604--572662	30	1.9	31	83	10	77	71	22	6	0	1.09
572516--572657	56	2.6	56	78	7	139	71	21	4	2	1.16
576075--576214	67	2.1	67	93	1	235	40	7	25	27	1.82
579075--579175	32	2.9	33	81	11	89	60	4	2	31	1.33
580578--580602	6	4.2	6	100	0	50	0	68	0	32	0.90
582275--582335	9	7.2	9	70	26	53	52	0	0	47	1.00
582275--582362	40	2.2	40	90	6	135	52	1	0	46	1.08
582708--582768	24	2.5	24	86	0	86	45	16	16	21	1.85
592245--592302	21	2.8	21	89	0	80	27	15	24	32	1.95
599549--599606	21	2.8	21	79	10	64	29	13	22	34	1.93
601961--602000	21	1.9	21	85	10	55	30	2	0	67	1.04
603236--603261	7	3.7	7	100	0	52	88	0	11	0	0.52
609200--609275	27	2.8	27	85	2	89	26	15	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609205--609308	28	3.8	28	84	1	129	23	15	25	36	1.93
609205--609332	28	4.6	28	80	2	125	22	16	25	35	1.94
610445--610763	24	12.3	27	65	16	147	22	26	16	34	1.95
610445--610763	52	6.1	52	84	0	395	22	26	16	34	1.95
611811--611859	3	16.3	3	100	0	98	32	0	0	67	0.91
611966--612066	28	3.6	28	80	7	125	20	15	27	35	1.94
611977--612093	56	2.1	56	82	3	137	23	17	21	37	1.94
612922--612960	20	2.0	20	85	10	53	46	0	20	33	1.51
615526--615589	22	2.9	22	76	0	74	26	40	17	15	1.89
615575--615630	25	2.1	28	83	12	73	19	25	19	35	1.95
621147--621203	21	2.7	21	83	0	78	26	12	26	35	1.92
626502--626546	20	2.3	20	85	11	58	42	0	24	33	1.55
626502--626553	20	2.6	20	82	11	54	42	1	23	32	1.65
641616--641709	17	5.8	17	75	12	81	39	2	3	55	1.28
641616--641705	6	15.7	6	76	9	89	41	2	3	53	1.30
641627--641705	23	3.4	23	82	0	95	41	2	3	51	1.33
642454--642515	21	3.0	20	80	7	61	54	6	1	37	1.36
643496--643652	58	2.7	58	80	15	155	36	26	3	33	1.74
643493--643686	30	6.6	27	70	19	99	37	26	3	32	1.72
655075--655723	206	3.2	206	82	3	826	35	18	23	22	1.96
655414--656065	352	1.9	350	88	2	986	35	21	22	21	1.96
657201--657275	3	25.0	3	75	5	71	58	5	1	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657512--657547	18	2.0	18	88	0	54	77	2	13	5	1.05
658267--658596	29	11.2	28	70	15	120	36	25	3	34	1.75
658254--658596	59	5.8	58	78	7	286	35	25	3	34	1.74
658680--658738	28	2.1	28	90	6	93	35	22	11	30	1.90
664625--664666	20	2.1	20	86	8	59	45	19	26	9	1.80
665151--665195	13	3.5	13	77	17	58	33	0	2	64	1.06
666767--666935	88	1.9	88	92	2	286	44	12	8	34	1.72
670452--670549	48	2.0	48	98	0	187	38	16	16	28	1.90
673097--673162	34	1.9	34	81	0	78	48	4	28	18	1.67
676272--676365	40	2.3	43	87	9	133	39	1	3	56	1.22
676272--676380	40	2.7	37	81	16	103	37	0	2	58	1.19
678356--678380	13	1.9	13	100	0	50	40	0	0	60	0.97
679194--679285	41	2.2	41	79	7	107	54	6	2	36	1.39
679372--679439	30	2.3	31	80	14	81	51	2	1	44	1.25
682106--682157	25	2.0	26	85	10	72	51	5	0	42	1.25
682229--682270	20	2.0	22	90	9	70	40	19	2	38	1.64
691691--691804	45	2.5	45	97	0	210	35	10	23	29	1.89
691691--691822	45	2.9	45	93	0	192	37	9	22	29	1.87
698336--698360	4	6.2	4	100	0	50	76	0	0	24	0.80
698588--698681	15	6.5	15	75	18	67	73	4	1	21	1.07
698588--698670	4	21.2	4	72	16	59	73	3	1	21	1.05
698570--698686	11	11.3	10	72	21	73	72	4	1	21	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698588--698687	18	5.4	18	74	16	73	74	4	1	21	1.05
698569--698687	54	2.2	53	78	16	129	73	4	1	21	1.09
698584--698687	36	2.8	36	77	13	115	74	3	0	21	1.04
698600--698687	28	2.9	29	80	12	90	73	3	1	21	1.04
705675--705719	22	2.0	22	100	0	90	31	13	31	24	1.93
708601--708656	13	4.5	13	72	17	55	46	0	1	51	1.11
709308--709343	18	2.1	18	89	5	56	41	0	25	33	1.55
709634--709670	18	2.1	18	89	0	56	48	0	27	24	1.51
714623--714685	24	2.6	24	87	0	72	26	15	9	47	1.76
716671--716839	84	2.0	84	98	0	329	36	14	13	35	1.85

Tables:   1   2   3