genome.fa.s15161.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015161.1 Kokia drynarioides strain JFW-HI SEQ_130205, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  994981

Tables:   1   2   3   

This is table  3  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718069--718098	2	15.0	2	100	0	60	50	0	0	50	1.00
732748--732837	28	3.3	27	78	13	94	26	13	22	37	1.91
732780--732832	27	2.0	26	82	10	63	28	15	20	35	1.93
754500--754537	19	2.0	19	89	0	58	39	0	5	55	1.23
756318--756365	24	2.0	24	88	8	71	39	16	10	33	1.83
763220--763244	13	1.9	13	100	0	50	40	0	16	44	1.47
771365--771394	2	15.0	2	100	0	60	0	50	0	50	1.00
774586--774619	14	2.5	14	90	4	52	17	14	5	61	1.52
775530--775618	24	3.7	24	75	4	72	31	25	20	22	1.98
777547--777598	23	2.3	23	83	6	61	25	26	17	30	1.97
778122--778247	23	5.5	23	73	0	108	25	32	15	26	1.96
778919--778990	4	18.2	4	94	2	83	50	8	0	41	1.33
783714--783780	23	2.9	23	86	0	98	26	32	13	26	1.94
785029--785055	2	13.5	2	100	0	54	48	0	0	51	1.00
790954--791083	23	5.6	23	76	3	109	26	30	13	30	1.94
790954--791083	47	2.8	46	78	2	125	26	30	13	30	1.94
796189--796252	27	2.4	26	89	7	94	40	1	3	54	1.25
797642--797678	8	4.6	8	90	9	58	0	10	0	89	0.49
797648--797679	9	3.7	9	95	4	57	0	9	0	90	0.45
799205--799236	16	2.0	16	93	0	55	53	3	18	25	1.59
804454--804503	21	2.4	21	80	6	57	30	14	24	32	1.94
810383--810445	23	2.7	23	72	18	58	69	3	1	25	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
810576--810645	11	6.5	10	80	11	68	80	1	1	17	0.87
810576--810645	10	7.2	9	76	13	61	80	1	1	17	0.87
810576--810640	21	3.1	21	78	20	66	80	1	1	16	0.88
810578--810635	25	2.3	26	85	11	77	79	1	1	17	0.90
810593--810644	17	3.1	17	79	17	63	78	0	1	19	0.84
810593--810647	25	2.3	23	82	14	60	78	0	3	18	0.90
818533--818603	27	2.7	27	84	2	90	29	22	21	26	1.99
818586--818740	28	5.6	28	88	0	186	34	20	16	27	1.95
818605--818773	28	6.0	29	81	6	127	33	20	17	28	1.95
818583--818770	84	2.2	83	81	4	234	34	20	17	28	1.95
820890--820937	25	1.9	25	83	8	62	50	20	2	27	1.60
838313--838404	36	2.6	36	91	0	157	28	9	17	44	1.80
842186--842247	23	2.5	24	85	12	74	8	12	6	72	1.26
844852--844890	20	2.0	19	90	5	60	41	10	30	17	1.83
854762--854787	7	3.7	7	100	0	52	46	0	53	0	1.00
857130--857156	13	2.1	13	100	0	54	44	7	14	33	1.73
863859--863919	32	1.9	32	96	0	113	45	18	21	14	1.84
865254--865588	29	11.6	29	70	13	190	35	23	2	38	1.68
865254--865588	30	11.6	30	70	13	184	35	23	2	38	1.68
865255--865421	59	2.9	55	83	9	169	38	22	1	37	1.65
865271--865540	113	2.4	114	76	11	257	35	24	1	37	1.67
869390--869454	29	2.2	29	97	0	121	35	23	0	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869372--869454	16	5.6	15	70	24	61	34	22	0	42	1.54
872478--872673	50	3.9	50	77	0	178	36	18	29	15	1.91
874768--875086	29	10.9	29	80	7	317	35	25	1	38	1.64
874802--875112	30	10.9	27	77	10	117	35	25	0	38	1.63
876745--876850	45	2.3	45	81	10	117	30	15	23	31	1.95
876748--876863	46	2.5	46	81	4	128	30	15	21	32	1.94
880219--880253	17	2.0	17	88	5	52	37	8	8	45	1.65
888382--888412	16	1.9	16	93	0	53	74	3	0	22	0.96
894099--894152	19	2.8	19	81	13	65	18	16	22	42	1.89
894570--894626	30	1.9	30	88	0	87	10	15	19	54	1.70
894660--894707	15	3.3	14	75	18	53	14	0	22	62	1.32
894651--894707	29	2.0	29	89	6	89	15	0	24	59	1.36
898571--898628	29	2.0	29	86	0	80	15	5	25	53	1.63
901104--901140	14	2.6	14	86	0	56	40	0	0	59	0.97
901681--901721	19	2.0	21	86	9	59	46	2	0	51	1.14
907682--907746	30	2.2	29	86	8	87	43	4	6	46	1.49
908902--909041	71	2.0	71	100	0	280	28	17	21	32	1.96
909624--909668	2	22.5	2	100	0	90	48	0	0	51	1.00
917864--917898	17	2.1	17	100	0	70	22	5	42	28	1.76
922674--922724	25	2.0	25	92	7	86	66	9	11	11	1.44
923544--923782	52	4.6	53	76	6	193	27	13	23	35	1.92
934124--934176	26	2.0	26	100	0	106	47	0	7	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
940409--940434	2	13.0	2	100	0	52	50	0	0	50	1.00
943749--943806	29	2.0	29	83	12	75	46	13	8	31	1.74
943769--943827	31	2.0	29	86	6	82	42	13	10	33	1.78
945091--945257	27	6.3	27	77	6	144	26	17	33	22	1.96
945195--945257	26	2.4	27	81	10	76	23	17	34	23	1.96
951333--951435	51	2.0	51	96	0	188	35	8	28	27	1.86
958037--958120	44	1.9	44	87	4	125	47	15	3	33	1.63
959810--959834	6	4.2	6	100	0	50	48	0	52	0	1.00
967711--967748	19	2.0	20	84	5	51	39	21	0	39	1.53
968210--968252	8	5.6	8	81	10	54	51	11	0	37	1.39
968210--968250	14	2.9	14	88	0	64	51	12	0	36	1.40
971793--971817	13	1.9	13	100	0	50	8	16	0	76	1.02
974821--974867	12	4.2	11	84	10	60	82	0	17	0	0.66
974821--974863	16	2.6	16	88	3	68	83	0	16	0	0.64
979608--979645	14	2.6	15	80	19	53	34	0	13	52	1.40
983171--983222	19	2.6	20	78	9	61	61	1	3	32	1.25
983189--983250	21	3.0	20	79	9	70	53	0	3	43	1.17
985306--985425	12	10.2	12	73	8	88	74	15	4	6	1.18
985306--985425	37	3.5	33	79	13	125	74	15	4	6	1.18
985313--985405	15	6.5	15	72	18	56	74	16	3	6	1.16
985313--985397	25	3.6	25	78	9	90	75	15	3	5	1.13
985401--985454	19	2.8	20	75	8	58	75	12	3	7	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
985348--985489	21	7.0	21	70	15	84	73	16	3	6	1.18
985735--985779	18	2.4	18	85	3	63	37	2	0	60	1.09
994889--994933	18	2.5	18	89	7	65	55	0	2	42	1.12

Tables:   1   2   3

The End!