Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015193.1 Kokia drynarioides strain JFW-HI SEQ_130237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  594178

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
482247--482401
57
2.7
57
78
9
163
42
2
3
50
1.34
482594--482635
16
2.6
16
92
0
66
30
16
4
47
1.67
486845--486879
14
2.3
16
90
9
56
20
5
17
57
1.60
494378--494425
17
2.9
16
81
6
51
31
2
4
62
1.26
497093--497142
9
5.6
9
87
0
73
28
8
16
48
1.74
502687--502733
24
2.0
24
95
0
85
23
4
8
63
1.40
502901--502961
22
2.6
22
79
7
68
18
0
4
77
0.95
502899--502976
27
2.9
27
78
14
90
20
0
3
75
0.95
514974--515015
22
1.9
22
85
9
59
42
0
11
45
1.41
524323--524381
24
2.4
23
81
10
64
54
3
3
38
1.34
529771--529832
28
2.4
25
77
17
63
56
1
3
38
1.25
534130--534160
6
5.2
6
100
0
62
16
67
16
0
1.23
534125--534169
18
2.5
18
74
0
54
28
55
13
2
1.50
535542--535778
120
2.0
120
84
3
316
27
20
17
34
1.95
538506--538566
22
2.8
22
87
7
81
72
1
11
14
1.20
538532--538561
15
1.9
16
93
6
53
70
0
13
16
1.18
541480--541534
21
2.4
24
88
8
80
40
32
10
16
1.83
548199--548239
14
3.0
13
89
10
64
36
0
17
46
1.48
548482--548547
17
3.8
17
77
18
82
48
9
7
34
1.63
551454--551496
22
2.0
22
90
0
68
27
0
2
69
1.00
559662--559706
18
2.4
19
85
11
65
55
0
0
44
0.99
564811--564844
17
2.0
17
100
0
68
41
0
11
47
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566490--566555
31
2.2
30
81
8
71
34
3
4
57
1.34
568066--568132
35
1.9
35
90
0
107
53
10
1
34
1.44
568904--568969
30
2.4
28
83
14
91
30
3
0
66
1.06
568906--568968
10
6.6
10
73
20
55
26
3
0
69
1.03
568975--569018
18
2.5
17
82
10
52
43
2
4
50
1.35
568980--569029
18
2.7
18
84
12
57
38
2
4
56
1.30
577220--577287
31
2.2
32
81
7
77
55
4
1
38
1.29
578323--578370
25
2.0
25
87
4
71
29
0
4
66
1.10
580468--580661
102
1.9
102
84
2
264
30
12
21
35
1.90
580805--580973
88
1.9
88
86
0
239
30
17
21
30
1.96
588604--588911
30
10.4
30
77
12
275
35
22
3
38
1.72
588604--588911
59
5.2
59
83
8
344
35
22
3
38
1.72
588580--588946
118
3.1
117
80
9
374
34
23
4
38
1.75
588604--588882
88
3.2
86
78
9
296
34
23
3
38
1.71
588862--588993
59
2.3
59
81
7
153
32
21
9
36
1.86
591844--591887
23
1.9
23
85
0
61
56
4
4
34
1.40

Tables:   1   2   3

The End!