genome.fa.s15193.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015193.1 Kokia drynarioides strain JFW-HI SEQ_130237, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  594178

Tables:   1   2   3   

This is table  2  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249947--249990	19	2.3	19	84	7	54	34	4	2	59	1.30
250031--250082	26	2.0	27	88	3	79	40	0	0	59	0.97
250053--250106	19	2.8	19	81	15	67	37	1	0	61	1.07
250272--250321	25	2.0	25	100	0	100	40	12	0	48	1.40
254582--254613	9	3.4	9	91	8	55	59	0	0	40	0.97
254582--254610	10	3.0	10	95	5	51	58	0	0	41	0.98
254896--255075	29	6.2	29	78	5	132	35	25	3	35	1.74
254892--255017	59	2.2	58	85	5	175	35	23	3	36	1.74
255050--255133	27	3.0	27	81	5	105	32	30	7	29	1.84
255059--255136	27	2.8	27	84	5	111	32	30	6	30	1.83
255055--255149	29	3.4	28	75	10	95	35	28	5	30	1.79
255325--255354	14	2.1	14	93	0	51	23	6	0	70	1.11
260486--260524	20	2.0	20	85	10	53	38	17	17	25	1.92
267375--267548	29	6.0	30	75	15	143	33	25	5	35	1.80
267371--267549	58	3.1	59	80	7	213	32	25	5	36	1.79
267555--267629	27	2.7	27	87	6	114	32	29	6	32	1.83
276699--276797	51	1.9	51	87	0	144	34	17	18	30	1.94
276970--277023	18	2.9	18	75	2	54	24	1	12	61	1.42
277038--277113	31	2.5	31	80	2	91	30	18	7	43	1.78
277311--277478	61	2.8	59	83	7	205	49	11	14	25	1.76
279297--279329	17	1.9	17	93	0	57	21	0	6	72	1.05
284483--284509	9	3.0	9	100	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284620--284649	15	2.0	15	93	0	51	53	10	13	23	1.69
286847--286904	19	3.1	18	78	9	62	68	5	0	25	1.10
286853--286917	19	3.5	17	80	16	67	66	3	0	30	1.07
286853--286917	9	6.9	9	77	19	62	66	3	0	30	1.07
286914--286953	21	1.9	21	84	0	53	62	7	7	22	1.47
287608--287673	29	2.2	29	86	2	87	62	1	1	34	1.14
287591--287686	39	2.5	38	83	10	115	60	2	1	36	1.15
287564--287686	9	12.7	9	69	20	63	59	4	1	34	1.26
287624--287686	29	2.2	29	88	5	92	61	0	1	36	1.05
287624--287742	20	6.1	19	67	21	75	56	0	5	36	1.30
291194--291266	29	2.5	28	76	12	76	35	4	1	58	1.25
292833--292884	16	3.2	16	78	10	54	32	3	0	63	1.12
296795--296861	29	2.2	29	77	15	66	41	1	13	43	1.53
298831--299064	113	2.1	113	91	0	378	42	8	16	32	1.78
304282--304336	3	18.3	3	96	0	92	30	0	3	65	1.10
313968--313992	6	4.2	6	100	0	50	68	16	16	0	1.22
324179--324211	2	16.5	2	100	0	66	48	0	0	51	1.00
325614--325650	2	18.5	2	88	0	56	51	5	0	43	1.24
326175--326326	28	5.5	28	88	0	198	34	20	19	25	1.96
326175--326326	56	2.7	57	87	3	220	34	20	19	25	1.96
326764--326810	23	2.0	23	100	0	94	48	29	0	21	1.50
327908--327978	34	2.1	34	94	0	124	28	21	7	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329959--330091	28	4.8	28	77	14	130	36	18	18	27	1.94
329959--330094	56	2.4	56	83	7	161	36	18	17	27	1.93
335997--336033	3	12.3	3	88	0	56	67	0	32	0	0.91
338303--338538	100	2.4	100	80	5	280	34	18	19	27	1.95
338516--338560	22	2.0	22	100	0	90	35	8	22	33	1.85
343034--343067	17	2.0	18	88	11	54	76	0	11	11	1.02
344046--344230	96	1.9	96	83	6	241	36	13	19	30	1.90
344692--345039	59	5.9	59	83	2	396	35	4	25	34	1.76
344692--345039	118	2.9	118	83	5	438	35	4	25	34	1.76
344635--344997	29	12.4	29	75	7	286	36	4	25	34	1.75
346890--346937	17	2.9	16	81	3	51	50	2	2	45	1.25
347340--348120	206	3.9	194	85	5	877	23	22	18	35	1.96
347542--348191	206	3.2	206	92	0	1032	23	22	19	34	1.97
358184--358368	96	1.9	96	86	6	268	35	14	20	30	1.91
358582--358642	28	2.2	28	85	5	79	27	9	29	32	1.89
358609--358817	59	3.5	59	77	8	158	35	8	23	33	1.84
358724--358819	29	3.3	28	75	13	86	32	7	23	36	1.83
358776--359154	59	6.5	59	84	4	414	34	2	25	38	1.68
358812--359150	29	11.5	30	75	8	297	34	1	24	39	1.66
358776--359154	29	12.9	28	75	10	289	34	2	25	38	1.68
360946--360993	6	8.3	6	77	9	55	54	2	0	43	1.12
360946--360994	17	2.9	17	90	0	71	55	2	0	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360919--360990	34	2.1	35	84	7	94	45	4	1	48	1.30
366192--366229	17	2.2	18	81	9	53	71	2	0	26	1.00
366412--366436	11	2.3	11	100	0	50	16	0	32	52	1.44
367040--367073	12	2.7	13	86	4	52	17	11	0	70	1.16
368675--368705	3	10.3	3	100	0	62	32	0	0	67	0.91
370664--370701	12	3.4	11	82	17	51	21	0	0	78	0.74
370664--370697	17	2.1	17	94	5	61	20	0	0	79	0.73
371200--371242	20	2.0	22	86	8	63	46	0	0	53	1.00
371784--371848	34	1.9	34	90	6	105	41	1	38	18	1.60
371912--371951	17	2.5	16	84	11	55	35	0	0	65	0.93
382485--382527	18	2.4	18	88	7	61	44	0	2	53	1.13
389883--389925	14	3.2	13	83	9	50	83	4	9	2	0.87
390952--391056	49	2.2	49	84	1	131	37	19	25	18	1.94
390876--391354	50	9.7	49	74	8	337	33	17	31	17	1.94
390864--391410	99	5.6	98	76	7	475	34	17	30	17	1.93
390877--391339	149	3.1	147	76	5	353	33	17	31	17	1.94
390865--391396	198	2.7	196	79	5	538	34	17	30	17	1.93
391586--392156	123	4.7	123	86	1	713	37	17	21	23	1.94
393632--393701	17	4.2	16	76	7	59	34	2	5	57	1.37
395102--395276	30	5.8	30	86	2	208	37	23	0	38	1.59
395102--395307	60	3.4	59	83	3	225	35	23	1	38	1.64
395102--395276	90	1.9	91	87	3	255	37	23	0	38	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395104--395299	30	6.5	31	84	3	143	37	23	1	37	1.65
397177--397227	19	2.7	19	79	14	52	41	15	5	37	1.72
397575--397649	26	2.8	26	89	6	105	28	6	1	64	1.27
402060--402093	14	2.4	14	90	0	50	38	8	23	29	1.85
402385--402472	46	1.9	46	90	0	140	40	21	9	28	1.84
407004--407041	15	2.5	15	86	0	58	28	13	5	52	1.61
409557--409617	16	3.9	16	72	12	54	49	0	1	49	1.10
409564--409713	77	1.9	79	82	6	189	45	2	5	46	1.40
411458--411482	9	2.8	9	100	0	50	12	0	0	88	0.53
411813--411878	32	2.1	32	97	0	123	40	16	12	30	1.85
417056--417085	3	10.0	3	100	0	60	33	0	0	66	0.92
418551--418616	31	2.1	31	82	5	78	30	0	4	65	1.13
420672--420712	6	6.8	6	97	0	64	9	0	4	85	0.73
422621--422777	80	2.0	80	92	0	260	21	21	27	29	1.98
423624--423670	22	2.0	26	84	16	66	42	6	0	51	1.27
424198--424431	105	2.2	105	96	0	405	35	2	5	56	1.34
424252--424415	51	3.2	51	72	11	179	38	1	6	53	1.38
430589--430647	28	2.1	29	83	3	75	47	1	5	45	1.34
437434--437471	19	2.0	19	90	10	60	50	2	10	36	1.51
437578--437622	15	3.1	15	87	9	58	24	0	4	71	1.05
438441--438480	14	2.7	14	84	7	53	45	0	0	55	0.99
440826--440855	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441761--441790	1	30.0	1	93	0	51	3	0	0	96	0.21
442413--442454	20	2.0	21	90	4	68	21	2	0	76	0.90
452100--452145	20	2.3	20	81	7	58	28	0	8	63	1.24
459101--459346	120	2.1	120	97	0	467	40	17	11	29	1.86
466709--466882	91	1.9	90	82	9	219	45	10	16	26	1.80
466777--466887	31	3.6	31	70	18	97	45	9	18	27	1.80
469670--469741	21	3.4	21	82	0	90	30	26	12	30	1.93
469791--469830	21	1.9	21	100	0	80	45	22	10	22	1.82
469785--469836	21	2.5	20	87	12	77	42	23	9	25	1.84
477551--477586	18	2.0	18	94	0	63	47	0	0	52	1.00

Tables:   1   2   3