genome.fa.s15199.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015199.1 Kokia drynarioides strain JFW-HI SEQ_130243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  887795

Tables:   1   2   3   

This is table  2  of  3  ( 334 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348049--348107	23	2.6	23	97	0	109	37	30	11	20	1.89
355127--355188	27	2.3	27	82	0	79	43	29	11	16	1.82
356803--356841	3	13.0	3	88	0	60	61	0	0	38	0.96
359675--359699	13	1.9	13	100	0	50	24	20	16	40	1.91
363855--364868	514	2.0	513	80	4	1136	24	18	16	39	1.92
367955--368020	32	2.1	32	94	0	114	33	15	10	40	1.81
371037--371075	20	1.9	21	94	5	71	25	15	15	43	1.86
372515--372654	58	2.4	57	82	9	158	35	5	27	32	1.80
372578--372895	118	2.7	117	82	8	385	33	4	29	32	1.76
372578--372895	58	5.4	57	81	7	327	33	4	29	32	1.76
372578--372899	29	11.0	28	78	12	283	33	4	30	31	1.76
374454--374515	6	10.8	6	81	10	76	54	1	0	43	1.09
374438--374547	17	6.4	17	85	6	141	53	2	1	41	1.25
374457--374514	11	5.2	11	81	8	64	55	1	0	43	1.10
374438--374547	35	3.2	33	85	7	139	53	2	1	41	1.25
374933--375542	206	3.0	205	87	2	852	21	22	20	35	1.96
382986--383028	21	2.0	22	86	13	63	16	25	9	48	1.75
385085--385160	38	2.0	38	97	0	143	31	22	7	38	1.83
387344--387777	29	14.9	28	79	8	231	33	2	29	33	1.73
387333--387718	59	6.6	59	77	10	232	33	2	29	33	1.72
387293--387455	28	5.7	27	68	19	82	32	4	29	33	1.79
387326--387790	117	4.0	115	80	11	432	33	3	30	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387408--387785	29	12.9	29	81	11	364	33	2	30	33	1.72
388871--388923	3	17.3	3	96	3	97	33	0	0	66	0.92
389634--389726	17	5.4	17	88	3	132	53	1	2	43	1.19
389634--389726	35	2.7	34	88	3	132	53	1	2	43	1.19
389667--389726	6	10.3	6	74	13	54	58	1	0	40	1.08
389688--389728	11	4.1	11	76	23	54	58	0	0	41	0.98
414161--414203	9	4.7	9	91	8	61	48	0	0	51	1.00
419421--419567	70	2.1	70	92	0	240	22	27	27	23	1.99
422534--422576	22	1.9	23	90	4	70	23	9	11	55	1.64
422907--422956	21	2.4	21	81	15	59	54	32	0	14	1.40
422907--422940	7	4.7	7	96	3	59	55	26	0	17	1.42
422909--422956	14	3.5	13	82	5	51	56	31	0	12	1.37
425344--425389	17	2.6	18	82	6	67	65	2	6	26	1.28
426031--426057	7	3.9	7	100	0	54	88	11	0	0	0.50
432405--432522	50	2.4	50	77	5	130	31	11	16	40	1.84
432471--433166	196	3.5	195	87	1	917	27	15	18	38	1.91
432307--433579	101	13.0	100	72	12	757	27	15	18	38	1.91
432478--433266	392	2.0	396	83	3	982	27	15	18	38	1.91
432628--433581	493	1.9	491	85	3	1328	27	16	18	37	1.92
433123--433570	195	2.3	195	82	5	557	27	16	17	38	1.91
438579--438630	26	2.0	26	100	0	104	30	7	26	34	1.85
443672--443962	30	9.9	29	72	16	215	29	5	32	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443665--443982	59	5.4	58	91	3	496	29	5	32	31	1.81
443710--443982	29	9.3	29	76	11	272	30	5	31	33	1.79
450815--450856	21	1.9	23	81	18	54	54	9	14	21	1.68
460314--460429	53	2.2	53	96	3	216	45	10	10	33	1.72
462922--462965	23	1.9	23	90	0	70	13	25	36	25	1.92
465849--465897	16	3.3	16	67	21	52	18	4	16	61	1.50
465847--465901	28	2.0	28	100	0	110	21	3	14	60	1.50
479843--479929	30	2.9	30	79	6	104	28	16	20	34	1.94
501320--501365	16	2.9	16	87	3	67	4	26	0	69	1.07
502680--502707	14	2.0	14	100	0	56	35	14	21	28	1.92
506896--506929	17	2.0	17	88	11	52	38	2	17	41	1.65
510402--510528	23	5.4	23	91	3	200	46	22	18	12	1.82
510405--510572	71	2.4	70	82	5	189	44	22	20	13	1.86
513285--513360	30	2.5	30	85	8	102	47	11	1	39	1.49
513855--513886	16	2.0	16	100	0	64	50	6	18	25	1.70
516460--516711	10	26.6	9	68	21	85	60	4	0	34	1.22
516512--516573	25	2.5	26	80	17	78	62	4	0	32	1.16
516545--516599	18	3.1	18	70	15	51	61	1	0	36	1.06
516461--516609	8	17.5	8	71	18	65	62	2	0	34	1.14
517767--517806	20	2.0	20	85	5	53	35	0	2	62	1.09
517834--518153	9	35.0	9	67	19	103	31	1	6	60	1.32
517841--517932	28	3.2	28	89	7	118	33	0	8	57	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517855--517932	28	2.8	28	96	1	140	30	0	10	58	1.31
518094--518194	18	5.8	17	71	15	55	36	0	2	59	1.19
518092--518153	8	7.0	9	73	21	51	30	0	3	66	1.08
518410--518460	23	2.2	23	82	3	57	23	9	13	52	1.70
518719--518761	20	2.2	20	87	8	61	69	0	6	23	1.12
518838--518887	21	2.3	22	83	10	59	52	8	0	40	1.31
518864--518948	28	3.1	27	81	8	100	58	5	0	35	1.22
518896--518945	9	5.6	9	84	15	68	58	6	0	36	1.23
518869--518956	10	9.3	10	76	9	51	61	6	0	31	1.22
518876--518955	18	4.4	18	80	10	74	61	6	0	32	1.21
518869--518958	18	4.8	19	74	12	69	60	6	0	33	1.23
519125--519178	27	2.0	27	96	0	99	20	12	11	55	1.67
523262--523288	4	6.8	4	100	0	54	25	25	48	0	1.52
532196--532240	18	2.6	18	89	3	65	62	6	0	31	1.21
532580--532809	76	3.1	75	63	19	174	39	6	5	48	1.54
532986--533030	14	3.5	14	77	22	62	31	17	24	26	1.97
532987--533034	24	2.0	24	100	0	96	33	16	25	25	1.96
534093--534306	39	5.5	39	73	2	160	35	19	18	25	1.95
534118--534306	78	2.4	77	84	5	229	35	19	17	26	1.94
534713--534845	70	1.9	67	83	4	167	31	12	13	42	1.81
537966--538146	52	3.5	52	91	0	281	37	22	12	28	1.91
543705--543733	6	4.8	6	100	0	58	65	0	34	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552800--552857	28	2.0	29	93	3	100	58	0	0	41	0.98
552803--552864	28	2.2	29	88	2	90	61	0	0	38	0.96
552833--552878	17	2.8	17	83	9	60	69	0	0	30	0.89
552953--553019	26	2.5	27	82	2	91	28	32	23	14	1.95
553167--553198	9	3.4	9	95	4	55	75	0	0	25	0.81
557526--557590	28	2.4	28	82	10	73	35	1	13	49	1.52
557641--557676	16	2.4	14	86	13	54	33	2	22	41	1.68
557641--557757	52	2.3	53	80	5	125	29	2	21	46	1.65
565703--565770	18	3.8	18	98	0	127	42	0	22	35	1.54
565801--565839	12	3.2	12	81	0	51	46	0	28	25	1.53
565797--565858	18	3.5	17	78	6	54	48	0	22	29	1.51
565941--566041	38	2.6	40	71	10	100	21	19	28	29	1.98
573537--573562	13	2.0	13	100	0	52	23	23	23	30	1.99
577244--577280	19	2.0	19	89	5	58	78	5	0	16	0.93
580318--580396	23	3.5	22	82	3	86	35	26	24	13	1.93
580386--580443	23	2.5	23	88	0	80	39	24	27	8	1.84
580525--580572	24	1.9	26	84	16	66	31	22	0	45	1.53
590791--590831	3	13.7	3	90	10	66	65	0	0	34	0.93
590791--590823	17	1.9	17	100	0	66	66	0	0	33	0.92
590791--590828	20	1.9	20	100	0	76	65	0	0	34	0.93
590910--590944	9	3.9	9	96	0	61	11	0	2	85	0.69
591357--591387	2	15.5	2	93	0	53	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592523--592564	18	2.3	18	84	8	50	35	4	2	57	1.33
597518--597559	22	1.9	22	85	0	57	28	7	9	54	1.59
600907--600940	7	4.9	7	100	0	68	85	0	0	14	0.60
607106--607194	31	3.0	29	74	8	79	33	13	14	38	1.85
607337--607393	29	1.9	29	89	3	87	49	12	8	29	1.70
618123--618234	59	1.9	59	94	0	197	37	9	18	33	1.84
618862--618914	6	9.0	6	81	4	63	41	0	3	54	1.18
618830--618909	29	2.8	28	78	14	65	37	2	6	53	1.40
618862--618914	23	2.3	23	76	3	61	41	0	3	54	1.18
618866--618926	17	3.5	17	82	4	68	42	0	3	54	1.17

Tables:   1   2   3