genome.fa.s15199.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015199.1 Kokia drynarioides strain JFW-HI SEQ_130243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  887795

Tables:   1   2   3   

This is table  3  of  3  ( 334 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618861--618926	29	2.3	29	81	5	80	40	0	3	56	1.15
619573--619609	16	2.4	15	95	4	65	64	0	0	35	0.94
619580--619647	9	7.8	9	71	23	56	57	4	2	35	1.34
620334--620358	5	5.0	5	100	0	50	20	60	20	0	1.37
620771--621080	29	10.7	28	66	19	131	32	26	3	37	1.72
620772--621079	58	5.3	58	83	6	392	32	25	3	37	1.72
620771--621083	115	2.7	116	84	4	416	32	26	3	37	1.73
620758--621078	174	1.8	174	88	6	490	32	26	3	38	1.72
621059--621121	28	2.2	28	91	0	99	31	30	9	28	1.89
630735--630767	16	2.1	16	100	0	66	30	18	27	24	1.98
632796--632991	99	2.0	100	85	3	270	36	21	26	15	1.93
632650--632966	148	2.1	148	91	2	503	37	21	26	14	1.92
634152--634184	16	2.1	15	94	5	57	63	0	0	36	0.95
634159--634238	9	8.8	9	70	22	51	57	3	3	35	1.34
635353--635724	57	6.5	58	80	9	372	30	26	4	39	1.75
635357--635628	86	3.2	86	74	16	251	31	25	2	39	1.71
635357--635751	29	13.8	28	71	18	219	30	26	5	37	1.78
635338--635724	115	3.4	113	81	9	426	29	26	4	39	1.76
635700--635762	28	2.2	29	85	2	83	30	30	12	26	1.93
635700--635772	29	2.6	29	82	6	78	30	28	10	30	1.91
637121--637155	14	2.4	14	85	4	52	37	0	0	62	0.95
640142--640171	11	2.7	11	100	0	60	63	10	10	16	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640918--640976	25	2.5	24	81	13	61	30	5	3	61	1.34
641246--641306	30	2.0	30	84	9	79	40	6	13	39	1.70
649540--649578	17	2.3	17	86	0	51	20	2	10	66	1.33
650189--650235	23	2.0	23	83	8	58	23	8	4	63	1.40
653466--653507	21	2.0	21	86	9	59	19	28	19	33	1.96
657914--657955	21	2.0	21	86	9	59	19	28	19	33	1.96
661405--661462	28	2.1	28	100	0	116	20	25	10	43	1.84
668557--668589	16	2.1	16	88	5	50	57	0	3	39	1.14
671093--671128	17	2.1	17	100	0	72	33	19	25	22	1.97
671519--671581	33	2.0	31	87	6	90	65	6	3	25	1.32
673583--673637	6	9.2	6	87	0	65	12	0	50	36	1.41
682051--682171	23	5.3	23	83	4	145	41	22	19	16	1.90
682048--682179	69	2.0	68	83	7	171	42	22	18	15	1.89
684642--684707	24	2.8	23	84	11	80	54	4	6	34	1.45
689044--689082	20	2.0	20	84	0	51	43	0	2	53	1.14
694352--694412	30	2.0	30	87	0	86	45	13	3	37	1.59
704599--704918	169	1.9	164	84	5	428	36	13	14	35	1.85
709096--709120	12	2.1	12	100	0	50	24	8	44	24	1.80
716860--716897	20	1.9	20	89	10	60	55	7	0	36	1.29
721943--721979	19	2.1	19	85	10	51	67	0	2	29	1.04
729541--729655	56	2.0	57	94	1	205	48	4	8	38	1.54
736617--736657	20	2.0	20	100	0	82	41	9	14	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
742792--742828	5	7.8	5	90	3	51	21	40	13	24	1.89
746682--746723	22	1.9	21	95	5	66	54	7	0	38	1.28
746787--746818	7	4.6	7	100	0	64	46	25	0	28	1.53
749476--749562	43	2.0	43	100	0	174	40	13	6	39	1.72
753414--753488	10	7.8	10	73	8	66	65	0	1	33	1.01
753454--753532	9	8.6	8	72	22	50	70	2	1	25	1.07
753410--753570	21	8.6	19	69	20	72	65	1	2	29	1.16
753417--753581	10	17.3	10	69	15	52	65	1	2	30	1.16
753461--753543	16	4.3	20	72	23	63	66	2	1	30	1.12
753456--753526	9	7.3	10	73	16	60	71	2	1	23	1.07
753456--753581	10	13.3	9	69	20	71	67	2	2	27	1.15
753786--753854	10	6.9	10	78	16	72	42	0	1	56	1.08
753774--753812	19	2.0	20	90	5	62	28	2	7	61	1.37
753769--753839	20	3.4	21	75	20	60	38	1	4	56	1.28
753805--753871	21	3.2	21	93	2	109	43	1	0	55	1.09
753846--753901	28	2.0	28	93	6	96	39	1	0	58	1.08
761398--761466	10	6.7	10	70	16	52	30	0	4	65	1.12
761372--761425	5	10.4	5	77	15	56	22	0	1	75	0.89
769673--769697	5	5.0	5	100	0	50	40	0	60	0	0.97
770788--770830	12	3.4	13	81	12	54	27	0	2	69	1.00
772035--772073	17	2.3	17	86	0	51	38	0	0	61	0.96
776336--776389	26	2.0	27	92	3	92	51	16	5	25	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777025--777077	26	2.0	26	100	0	106	30	26	11	32	1.91
790943--791130	94	2.0	93	95	1	340	31	6	21	40	1.78
794683--794723	20	2.0	20	86	9	57	58	12	0	29	1.34
794996--795239	82	3.0	82	85	1	337	23	11	22	42	1.86
795825--795887	29	2.1	30	82	11	76	57	7	0	34	1.28
795832--795908	37	2.1	37	85	0	100	55	5	1	37	1.30
800579--800661	29	2.8	29	75	10	78	24	16	6	53	1.66
807980--808009	6	4.8	6	92	8	51	36	0	63	0	0.95
808927--808999	30	2.4	31	84	6	96	61	9	1	27	1.35
811865--811919	21	2.6	21	94	0	92	41	21	3	32	1.71
812635--812778	52	2.8	51	87	6	191	34	26	13	25	1.94
815886--815922	18	2.2	17	82	17	51	45	0	2	51	1.15
816554--816588	13	2.6	13	95	4	61	31	14	34	20	1.92
817540--817619	21	3.7	21	73	20	67	32	0	5	62	1.17
818036--818083	24	2.0	24	100	0	96	41	8	0	50	1.33
819518--819553	5	7.2	5	96	0	63	19	38	25	16	1.92
823072--823103	3	10.7	3	93	0	55	0	34	34	31	1.58
835264--835316	21	2.5	22	81	12	65	52	3	1	41	1.30
837533--837565	17	1.9	17	100	0	66	45	12	18	24	1.83
837964--838072	41	2.6	42	84	4	141	40	16	21	22	1.91
837961--838155	41	4.7	41	72	15	132	40	16	22	20	1.92
840470--840577	43	2.5	43	89	0	153	25	17	25	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847096--847175	41	2.0	40	87	9	117	62	12	5	20	1.48
856894--856938	16	2.9	16	80	16	58	46	2	0	51	1.13
874495--874686	95	2.0	95	100	0	384	41	22	12	22	1.88
881090--881150	17	3.5	17	75	16	70	34	3	4	57	1.36
884508--884555	13	3.1	16	80	20	66	33	0	0	66	0.92
887615--887670	27	2.1	27	83	6	69	32	21	35	10	1.88

Tables:   1   2   3

The End!