genome.fa.s15226.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015226.1 Kokia drynarioides strain JFW-HI SEQ_130270, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  713267

Tables:   1   2   3   

This is table  2  of  3  ( 282 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381559--381680	41	3.0	41	81	4	156	31	18	18	31	1.96
381688--382694	39	25.8	39	71	8	589	26	18	28	27	1.98
381690--382695	117	8.6	115	74	8	704	26	18	28	27	1.98
381688--382692	78	12.9	78	81	3	952	26	18	28	27	1.98
383899--383948	9	5.6	9	88	6	66	0	16	0	84	0.63
383895--383948	18	2.9	19	86	5	76	0	16	0	83	0.65
384770--384819	8	5.6	9	83	11	50	0	20	0	80	0.72
384775--384820	9	5.0	10	82	15	55	0	17	0	82	0.67
384775--384820	18	2.4	18	89	7	65	0	17	0	82	0.67
384780--384822	14	3.1	14	80	19	54	0	13	0	86	0.58
389096--389166	28	2.5	29	88	4	108	42	1	19	36	1.60
389097--389368	30	9.2	29	75	9	212	37	2	22	37	1.67
389097--389327	58	3.9	60	78	8	224	38	1	21	38	1.64
397119--397197	17	4.6	17	73	6	61	20	16	11	51	1.74
397154--397206	24	2.2	24	96	0	97	16	13	13	56	1.67
397774--397799	11	2.4	11	100	0	52	84	0	15	0	0.62
398261--398356	26	3.7	26	72	5	77	29	19	20	30	1.97
407034--407119	27	3.1	27	85	5	102	16	5	23	54	1.63
407213--407358	28	5.2	28	78	4	143	23	11	23	40	1.88
410582--410616	16	2.1	17	89	5	54	40	0	2	57	1.14
410763--410796	2	17.0	2	87	0	50	55	0	0	44	0.99
410938--411005	29	2.2	30	82	10	84	48	4	1	45	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410945--411005	29	2.1	30	87	3	88	47	4	1	45	1.34
410979--411024	9	5.2	9	75	15	51	58	2	0	39	1.10
410984--411024	19	2.2	19	91	8	66	58	2	0	39	1.11
411145--411193	21	2.2	23	85	7	66	67	6	0	26	1.14
411597--411672	34	2.2	35	81	6	84	51	0	0	48	1.00
413990--414064	30	2.5	29	83	10	89	50	5	0	44	1.24
415580--415621	22	1.9	22	85	9	59	52	11	9	26	1.68
417263--417318	23	2.4	25	72	22	59	46	8	0	44	1.34
417216--417298	45	2.0	43	84	13	111	45	6	1	46	1.35
417552--417594	16	2.5	18	81	11	54	48	4	0	46	1.22
418934--418994	29	2.1	30	87	3	88	45	3	4	45	1.41
422351--422388	15	2.7	15	88	8	53	28	0	10	60	1.30
422672--422760	25	3.4	25	75	15	81	65	5	2	26	1.27
423200--423290	30	3.1	29	80	10	98	49	4	0	46	1.22
433606--433658	21	2.5	20	85	11	63	33	26	11	28	1.91
440784--440826	21	2.0	23	90	9	72	37	18	9	34	1.83
447259--447497	52	4.6	52	87	0	343	28	14	21	35	1.93
447446--447619	62	2.8	62	85	3	217	30	12	22	33	1.92
455216--455254	21	1.9	21	89	5	62	66	7	12	12	1.43
471589--471651	19	3.3	19	77	0	72	31	19	23	25	1.98
471762--471882	36	3.4	36	84	6	131	35	9	25	28	1.88
482834--483019	40	4.7	40	83	5	214	24	18	27	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482837--483019	80	2.3	80	85	1	251	24	18	26	30	1.98
482837--483057	80	2.8	80	79	6	189	24	17	28	29	1.97
486355--486384	16	1.9	16	93	6	53	33	0	3	63	1.11
489093--489264	40	4.3	40	87	2	238	25	18	25	30	1.98
489119--489283	40	4.1	40	80	4	163	27	18	24	29	1.98
489119--489283	80	2.1	80	84	2	215	27	18	24	29	1.98
496986--497162	25	6.8	26	77	9	159	24	18	22	34	1.96
498493--498594	40	2.8	35	70	13	96	24	22	23	29	1.99
501106--501174	25	2.8	25	88	0	84	37	27	14	20	1.91
501399--501486	45	2.0	45	86	0	122	27	23	9	39	1.85
501803--501834	14	2.1	16	88	11	50	59	18	0	21	1.38
510028--510053	7	3.7	7	100	0	52	15	15	26	42	1.87
510025--510060	14	2.6	14	81	0	54	19	22	22	36	1.95
510055--510091	20	1.9	20	94	5	67	21	16	10	51	1.74
512533--512579	22	2.1	22	96	0	85	29	14	48	6	1.69
513937--513982	22	2.1	22	95	0	83	36	43	2	17	1.61
514009--514101	27	3.5	26	78	11	98	22	27	16	33	1.95
514009--514101	13	6.9	14	68	7	66	22	27	16	33	1.95
514111--514148	20	1.9	20	88	0	58	10	21	21	47	1.80
516569--516606	15	2.4	16	82	4	51	31	5	10	52	1.58
517250--517290	19	2.3	18	87	8	57	36	4	7	51	1.51
518091--518160	23	3.0	23	80	2	86	31	12	14	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518144--518189	23	2.0	23	83	8	58	43	10	13	32	1.78
520723--520847	27	4.7	27	74	11	105	32	20	14	32	1.92
520722--520863	27	5.4	26	72	11	101	33	20	14	31	1.92
520735--520897	79	2.1	79	94	0	281	33	21	12	32	1.90
529380--529421	21	2.0	21	95	0	75	40	19	7	33	1.78
531699--531741	22	2.0	22	86	9	61	27	0	4	67	1.10
538977--539016	21	1.9	21	84	0	53	30	5	27	37	1.78
542653--543545	49	18.2	49	70	12	288	40	16	22	20	1.91
542787--543603	147	5.6	145	77	7	677	40	16	21	21	1.91
542653--543161	244	2.1	241	79	6	542	40	15	22	21	1.91
542655--543592	98	9.6	98	73	5	444	40	16	22	20	1.91
552555--552605	15	3.6	15	82	15	63	3	37	0	58	1.16
552558--552610	12	4.2	12	81	13	61	1	39	0	58	1.09
559796--559839	23	2.0	22	86	4	61	45	15	0	38	1.47
561852--561904	26	2.0	26	96	0	97	39	3	22	33	1.72
565090--565122	2	16.5	2	100	0	66	48	0	0	51	1.00
569315--569375	27	2.2	28	85	2	79	27	9	29	32	1.89
569367--569511	59	2.5	57	75	8	139	38	5	21	34	1.77
569471--569554	28	3.0	28	71	15	73	40	3	27	28	1.73
569502--569783	88	3.2	86	80	10	295	36	3	25	33	1.74
569565--569787	29	7.6	28	73	14	157	36	2	26	34	1.71
569705--569817	29	3.9	30	78	12	112	44	3	22	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569564--569817	88	2.9	88	81	6	230	38	3	25	33	1.72
569689--569815	59	2.2	58	87	5	177	41	3	22	32	1.72
569689--569834	59	2.5	58	84	6	161	41	4	22	31	1.73
569705--569842	29	4.7	30	75	12	99	41	4	22	31	1.73
570943--570995	12	4.2	12	77	18	54	26	0	3	69	1.05
570960--571044	3	28.0	3	76	7	82	34	0	3	62	1.12
570948--571041	15	6.4	15	76	14	88	32	0	4	62	1.14
571787--571826	17	2.4	17	91	0	62	55	2	0	42	1.13
571848--572491	321	2.0	321	97	0	1216	29	22	18	29	1.97
572653--573031	49	7.7	49	76	7	329	15	24	19	39	1.91
572538--572984	98	4.6	97	73	9	332	17	23	19	39	1.92
572538--573072	146	3.6	146	77	7	462	17	23	19	39	1.92
583872--583943	30	2.4	30	100	0	144	59	2	0	37	1.12
588124--588151	4	7.0	4	100	0	56	50	0	25	25	1.50
590802--590836	17	2.1	18	89	10	56	40	2	5	51	1.40
591095--591206	44	2.5	44	82	8	102	47	0	1	50	1.11
591125--591202	16	4.9	16	78	12	72	44	0	0	55	0.99
591125--591210	10	9.2	10	69	23	62	45	0	0	54	0.99
591135--591209	30	2.4	30	82	8	80	44	0	0	56	0.99
591125--591212	46	2.0	44	88	4	131	45	0	0	54	0.99
591125--591219	26	3.8	25	74	18	83	44	1	0	54	1.07
593073--593114	21	2.0	20	90	4	66	45	4	7	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595342--595388	22	2.1	23	84	4	60	23	14	8	53	1.69
599762--599799	17	2.2	18	85	4	51	78	0	2	18	0.86
599769--599860	9	10.5	8	70	18	51	67	0	4	28	1.10
599766--599835	18	3.7	19	75	11	63	68	0	4	27	1.08
599712--599817	49	2.2	49	81	10	119	66	0	1	31	1.09
599775--599860	10	9.6	9	72	14	54	66	0	4	29	1.12
599768--599908	54	2.6	53	83	10	160	64	1	5	28	1.25
601399--601446	20	2.5	20	86	3	62	43	0	14	41	1.45
602725--602766	19	2.2	20	86	4	59	16	28	2	52	1.56
619674--619700	3	9.0	3	100	0	54	66	0	0	33	0.92

Tables:   1   2   3