genome.fa.s15232.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015232.1 Kokia drynarioides strain JFW-HI SEQ_130277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  719139

Tables:   1   2   3   

This is table  2  of  3  ( 341 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358820--358957	15	9.6	14	73	20	99	24	5	1	68	1.18
358913--358958	5	8.8	5	82	17	58	21	0	0	78	0.76
358883--358956	33	2.3	32	83	2	85	22	6	0	70	1.11
358916--358979	12	5.7	12	77	19	66	21	1	1	75	0.98
358782--358957	17	10.7	16	69	18	96	23	3	3	68	1.22
358917--359016	32	3.0	33	80	12	89	23	5	2	70	1.18
358988--359023	18	2.0	18	88	0	54	22	13	2	61	1.46
361496--361623	63	2.0	65	95	3	233	53	3	22	20	1.59
369761--369800	19	2.0	21	85	9	57	37	0	15	47	1.45
370099--370132	17	1.9	17	88	5	50	47	0	0	52	1.00
370809--370864	26	2.3	24	82	11	69	66	0	0	33	0.92
370819--370861	20	2.2	20	83	8	52	67	0	0	32	0.91
370987--371021	18	2.0	17	88	5	52	57	0	0	42	0.99
381353--381411	31	2.0	31	80	12	70	42	13	16	27	1.86
398307--398346	18	2.3	18	86	4	55	40	5	0	55	1.22
398539--398572	7	4.9	7	96	0	59	32	58	8	0	1.29
399340--399392	24	2.2	24	100	0	106	13	18	50	16	1.77
400836--400893	18	3.1	18	72	18	55	3	39	0	56	1.16
400907--400987	6	13.3	6	74	7	74	56	0	43	0	0.99
400959--401022	15	4.1	15	79	4	65	67	0	31	1	1.00
400917--401007	12	7.4	13	73	10	66	61	0	37	1	1.03
401106--401189	15	5.6	15	72	8	55	3	45	1	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401121--401183	18	3.5	18	70	8	56	4	44	1	49	1.33
401158--401201	21	2.1	21	86	0	61	4	40	0	54	1.21
401206--401306	6	16.8	6	75	11	64	52	0	44	2	1.16
401206--401270	21	3.2	21	83	14	68	56	0	40	3	1.15
401474--401533	6	10.2	6	83	3	50	60	0	36	3	1.14
401500--401558	3	20.0	3	85	3	84	64	0	35	0	0.94
401549--401587	12	3.3	12	82	3	53	61	2	35	0	1.10
401243--401701	237	2.0	233	83	4	582	41	12	22	23	1.88
401686--401738	3	17.7	3	80	0	61	3	56	1	37	1.28
401761--401869	6	18.2	6	75	16	68	62	0	35	0	1.08
401815--401883	18	3.9	18	83	10	63	66	1	31	0	1.00
401999--402042	21	2.1	21	87	8	63	4	40	0	54	1.21
402058--402122	18	3.6	17	80	10	76	67	0	30	1	1.00
402225--402268	18	2.4	18	85	7	54	4	50	0	45	1.22
402303--402356	3	18.3	3	80	3	65	59	0	40	0	0.98
402306--402365	6	10.2	6	90	3	77	58	0	41	0	0.98
402596--402672	9	8.6	9	80	11	86	61	0	38	0	0.96
402578--402673	12	8.0	12	78	14	65	62	0	37	0	0.95
402596--402672	6	12.8	6	82	10	86	61	0	38	0	0.96
402771--402858	6	14.8	6	80	9	65	3	47	1	47	1.26
402774--402822	3	16.7	3	78	4	55	4	57	2	36	1.30
402812--402855	21	2.1	21	87	8	63	4	40	0	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402867--402932	12	5.2	12	73	10	51	54	0	42	3	1.15
402870--402922	21	2.5	21	76	11	63	56	0	41	1	1.10
402885--402928	15	2.9	15	82	0	61	52	0	43	4	1.22
403085--403169	6	14.2	6	76	11	59	3	45	1	49	1.26
403184--403280	6	16.3	6	77	10	83	56	0	42	1	1.06
403191--403293	46	2.2	47	87	3	145	57	0	41	0	1.05
403197--403306	21	5.1	22	75	10	86	58	0	40	0	1.04
403401--403440	21	1.9	21	89	0	62	5	47	0	47	1.24
403445--403525	6	13.5	6	72	14	60	59	0	39	1	1.05
403449--403504	21	2.7	21	83	5	78	58	0	41	0	0.98
403458--403506	15	3.3	15	82	0	62	57	0	42	0	0.99
403445--403506	27	2.3	27	91	0	106	59	0	40	0	0.97
403445--403525	9	9.0	9	73	15	60	59	0	39	1	1.05
403242--403663	225	1.9	229	88	5	649	34	18	18	28	1.95
403623--403699	6	12.8	6	77	20	54	5	46	2	45	1.39
403665--403708	21	2.1	21	86	0	61	4	40	2	52	1.34
403730--403832	6	16.2	6	73	11	71	53	0	43	2	1.15
403732--403820	21	4.1	21	75	13	72	53	0	43	2	1.13
403726--403820	33	2.9	33	80	4	102	54	0	43	2	1.12
403826--403869	19	2.4	19	80	3	54	63	0	29	6	1.20
404588--404702	57	2.0	57	94	0	203	28	24	15	31	1.96
404738--404781	22	2.0	23	86	13	65	2	29	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405006--405046	21	2.0	21	90	0	64	34	29	12	24	1.91
405985--406014	6	5.0	6	100	0	60	33	50	0	16	1.46
407470--407540	33	2.2	33	94	0	124	22	26	25	25	2.00
407470--407554	33	2.6	33	90	0	116	20	24	25	29	1.99
408984--409057	27	2.6	28	79	14	71	40	1	1	56	1.16
411453--411500	14	3.3	14	77	11	51	33	0	2	64	1.05
415670--415888	42	5.2	42	79	9	196	26	25	10	37	1.88
417588--417670	4	20.5	4	85	2	103	67	2	4	25	1.23
423987--424039	24	2.3	22	72	12	52	24	5	11	58	1.54
426057--426089	2	16.5	2	100	0	66	51	0	0	48	1.00
427937--427980	14	2.8	16	80	16	56	52	0	0	47	1.00
428483--428556	29	2.5	29	78	8	78	54	12	9	24	1.67
430177--430247	9	7.8	9	73	14	56	32	4	2	60	1.30
430238--430291	22	2.6	21	83	16	76	46	0	0	53	1.00
434953--435001	21	2.3	21	79	6	55	20	16	22	40	1.91
440825--440936	41	2.7	41	92	0	188	30	36	16	16	1.91
440922--441009	41	2.1	41	85	4	115	28	34	17	20	1.95
440985--441072	41	2.1	41	80	0	95	28	30	15	25	1.96
443411--443479	31	2.2	31	84	5	86	37	7	13	42	1.71
445144--445200	27	2.1	27	81	12	64	64	10	3	21	1.39
445322--445366	20	2.3	19	88	11	65	20	0	13	66	1.24
445323--445367	19	2.3	20	84	3	65	17	0	13	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445883--445924	22	1.9	22	85	0	57	28	2	26	42	1.67
450931--451022	38	2.4	38	87	0	112	32	11	19	35	1.88
450959--451038	38	2.1	38	85	0	106	32	11	20	36	1.88
451130--451378	44	5.7	44	75	2	153	24	19	16	38	1.92
451110--451364	88	2.9	88	78	3	253	24	18	16	40	1.91
458377--458418	7	5.9	7	81	15	50	85	2	11	0	0.68
458366--458440	15	4.6	16	72	9	55	84	4	10	1	0.82
458386--458441	5	11.0	5	78	14	53	82	1	16	0	0.76
458367--458440	12	6.4	11	80	14	78	85	2	10	1	0.77
458368--458440	23	3.2	21	79	13	74	84	2	10	1	0.78
458376--458441	17	3.7	18	78	11	66	83	3	13	0	0.76
459290--459990	98	7.3	98	72	10	474	35	16	20	27	1.94
459290--459704	186	2.2	186	79	7	448	36	15	19	28	1.92
459394--460001	99	6.3	99	73	9	453	36	16	20	26	1.94
459728--459892	50	3.3	50	72	8	147	33	17	23	25	1.96
459618--460001	199	1.9	198	86	1	536	34	16	21	27	1.95
461093--461155	21	3.0	21	88	2	81	28	25	15	30	1.96
475790--475831	20	2.1	20	100	0	84	45	26	4	23	1.73
476914--476961	17	2.8	17	79	20	55	50	6	18	25	1.70
486669--486932	36	7.3	36	88	0	366	30	9	23	37	1.86
486671--486932	108	2.4	108	92	0	425	30	9	22	37	1.86
490111--490200	45	2.1	42	83	6	108	47	2	2	47	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490211--490356	34	4.3	33	76	13	143	41	3	2	52	1.29
490308--490375	25	2.8	25	82	6	68	44	1	0	54	1.09
492037--492090	20	2.8	20	85	2	74	59	3	1	35	1.26
492127--492176	9	5.3	10	72	13	52	60	0	0	40	0.97
492124--492163	19	2.1	19	85	0	53	67	0	0	32	0.91
494114--494138	12	2.1	12	100	0	50	36	8	16	40	1.77
495906--496005	39	2.6	39	91	0	155	34	20	19	27	1.96
498868--499062	12	15.9	12	77	12	155	49	13	1	35	1.51
498882--499049	6	28.7	6	82	9	204	49	14	1	35	1.51
498867--499064	28	7.1	28	84	6	197	48	13	1	36	1.51

Tables:   1   2   3