genome.fa.s15232.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015232.1 Kokia drynarioides strain JFW-HI SEQ_130277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  719139

Tables:   1   2   3   

This is table  3  of  3  ( 341 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498867--499064	6	33.0	6	84	0	135	48	13	1	36	1.51
499233--499281	3	16.3	3	100	0	98	67	0	0	32	0.91
504711--504979	51	5.3	51	87	2	360	33	15	22	27	1.95
506920--507058	26	5.3	26	84	3	172	33	17	20	28	1.95
506913--507058	52	2.8	52	88	1	222	33	17	20	28	1.96
508516--508731	37	5.8	37	82	1	191	36	31	18	13	1.90
508516--508735	74	3.0	74	79	1	217	36	30	18	14	1.90
508924--508996	6	12.7	6	77	8	80	42	1	2	53	1.23
508913--509012	17	5.4	17	74	15	83	40	2	2	56	1.22
508914--508996	23	3.7	23	83	4	98	40	1	2	55	1.21
509739--509801	3	20.0	3	76	9	54	55	3	3	38	1.32
509739--509801	19	3.3	20	80	6	69	55	3	3	38	1.32
510843--511219	29	12.7	29	76	13	326	33	28	4	33	1.78
510842--511219	59	6.4	59	81	9	339	33	28	4	33	1.78
514130--514218	45	2.0	45	93	0	151	43	16	4	34	1.69
516536--516561	13	2.0	13	100	0	52	15	15	15	53	1.73
517909--517965	19	3.0	19	78	19	57	59	1	0	38	1.08
517936--517973	19	2.0	19	89	0	58	57	0	0	42	0.98
529941--529991	21	2.4	21	86	0	66	35	15	15	33	1.90
530931--530965	18	1.9	18	88	11	54	40	17	11	31	1.85
534093--534169	21	3.7	19	76	13	55	28	28	12	29	1.94
541878--542015	52	2.7	51	84	7	188	34	15	22	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542070--542239	61	2.8	61	90	2	245	33	15	23	27	1.95
549118--549358	52	4.6	52	84	5	283	33	15	23	27	1.95
549307--549479	61	2.9	61	85	4	226	35	13	21	29	1.92
550138--550195	21	2.8	21	91	0	89	34	13	17	34	1.89
567581--567706	52	2.4	52	86	2	164	35	15	6	42	1.73
569381--569484	6	16.8	6	66	20	54	40	5	0	53	1.25
569381--569483	20	5.6	18	76	15	95	39	5	0	54	1.25
569435--569492	16	3.4	16	75	25	64	44	5	0	50	1.24
569381--569492	36	3.1	36	88	6	165	40	6	0	53	1.26
571288--571338	22	2.4	21	78	18	52	43	9	33	13	1.77
579008--579284	119	2.3	119	90	0	428	34	22	22	21	1.97
578803--579480	324	2.1	324	89	2	1022	35	20	21	22	1.96
579127--579711	206	2.8	206	88	2	872	36	19	21	22	1.95
580107--580157	21	2.5	21	93	3	86	37	1	0	60	1.08
582042--582386	58	5.9	59	79	5	278	34	27	4	33	1.77
582042--582299	30	8.8	29	79	7	254	34	27	4	33	1.76
582127--582412	116	2.5	115	82	7	319	33	29	4	32	1.77
585315--585381	24	2.8	24	88	2	91	10	37	2	49	1.53
591247--591290	23	2.0	22	82	8	54	25	11	25	38	1.89
593346--593477	30	4.4	30	79	1	113	44	10	14	30	1.79
593346--593477	60	2.2	60	81	0	147	44	10	14	30	1.79
593495--593576	30	2.8	29	78	12	94	31	0	23	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594291--594356	30	2.2	30	89	5	98	43	12	10	33	1.76
594305--594386	30	2.7	30	86	3	103	42	10	12	34	1.77
594310--594436	30	4.2	29	76	11	87	39	8	14	37	1.77
594364--594447	30	2.8	31	75	15	86	32	5	17	44	1.73
594407--594522	60	1.9	60	82	6	146	33	0	21	43	1.59
595213--595329	30	3.9	30	86	2	146	42	10	16	30	1.81
595201--595477	30	9.3	30	73	11	140	38	6	19	35	1.79
595201--595432	60	3.9	59	75	6	164	37	6	18	36	1.78
596457--596505	16	3.1	16	80	19	59	81	2	0	16	0.78
596936--597140	39	5.2	39	77	7	193	26	18	23	31	1.98
596936--597140	79	2.6	79	89	2	288	26	18	23	31	1.98
597180--597289	50	2.2	50	83	6	152	25	23	18	32	1.97
604313--604368	16	3.6	15	77	18	53	73	1	3	21	1.08
604932--605072	41	3.4	41	84	4	160	37	10	27	24	1.88
609822--609867	24	1.9	23	86	8	65	56	8	4	30	1.49
611904--611947	5	8.2	5	85	14	61	79	0	0	20	0.73
611907--611947	6	7.3	6	88	5	52	80	0	0	19	0.71
611904--611947	22	2.0	21	95	4	79	79	0	0	20	0.73
626511--626575	24	2.8	24	85	2	87	43	20	12	24	1.86
626983--627045	24	2.6	24	87	0	90	50	9	14	25	1.72
628956--629018	24	2.6	24	87	0	90	50	9	14	25	1.72
632451--632533	40	2.1	40	83	0	103	38	16	19	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632619--632728	41	2.7	41	81	4	116	30	20	24	24	1.98
637084--637214	69	2.0	65	84	6	172	37	12	5	44	1.66
647979--648272	51	5.8	51	89	3	394	29	21	15	33	1.94
653488--653526	6	6.5	6	87	0	51	23	30	0	46	1.53
657240--657273	14	2.3	15	90	5	52	35	0	14	50	1.44
658728--658836	33	3.3	33	85	2	130	29	15	23	31	1.95
658778--658868	33	2.8	32	88	3	119	31	16	21	29	1.95
661215--661245	15	2.0	16	93	6	55	51	12	3	32	1.56
672539--673346	49	16.6	49	76	6	523	35	15	27	21	1.93
672664--673298	244	2.6	244	79	5	705	35	15	27	20	1.94
674285--674311	14	1.9	14	100	0	54	74	0	0	25	0.83
676518--676579	17	3.6	18	76	6	65	20	22	27	29	1.99
702299--702342	20	2.2	20	83	4	52	25	4	9	61	1.45
704427--704590	29	5.7	29	75	8	95	31	6	28	34	1.83
704346--704542	58	3.4	57	71	11	143	32	9	26	31	1.88
704574--704892	29	10.9	27	74	16	171	37	1	23	37	1.65
704467--704710	87	2.8	84	77	9	222	34	4	25	35	1.77
704549--704921	30	12.7	29	75	13	223	36	1	23	37	1.66
704635--704921	59	4.9	58	79	12	268	37	1	23	37	1.64
706707--706797	17	5.4	17	81	0	110	54	6	1	37	1.34
707154--708457	208	6.3	207	81	3	1332	23	21	17	37	1.94
707202--708444	417	3.0	415	84	2	1534	22	21	17	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707191--708457	624	2.0	624	83	1	1574	23	21	17	37	1.94
708928--709282	50	7.1	50	73	7	249	17	29	16	36	1.92
708928--709233	100	3.0	100	80	5	348	17	29	16	36	1.92
708943--709282	100	3.4	99	78	7	323	17	30	15	36	1.91
710225--710304	7	11.0	7	72	17	65	2	18	1	77	0.95
710225--710277	21	2.4	23	90	6	83	1	18	1	77	0.96
711831--711988	81	2.0	81	97	0	298	18	23	11	46	1.81
715511--715872	29	12.5	28	70	15	127	33	6	26	33	1.82
715633--715873	88	2.8	87	82	7	267	33	5	26	35	1.79
715713--715994	88	3.2	87	78	10	245	36	2	24	36	1.69
715828--716061	30	7.8	29	80	8	231	37	2	23	36	1.67
715771--716061	60	4.9	59	78	14	253	36	2	24	37	1.67
717822--717912	17	5.4	17	78	0	101	52	5	2	39	1.37

Tables:   1   2   3

The End!