genome.fa.s15237.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015237.1 Kokia drynarioides strain JFW-HI SEQ_130282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  810367

Tables:   1   2   3   

This is table  2  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223878--223916	20	1.9	20	89	5	60	51	0	23	25	1.49
223750--224081	164	2.0	169	82	10	405	38	0	35	25	1.59
224118--224154	9	4.1	9	89	0	56	27	10	13	48	1.75
224118--224154	18	2.1	18	94	0	65	27	10	13	48	1.75
225908--225947	21	1.9	21	89	0	62	27	10	10	52	1.66
232612--232649	19	2.0	19	85	10	51	28	5	21	44	1.73
233839--233890	21	2.5	21	79	14	54	42	1	42	13	1.55
236421--236489	34	2.0	34	97	0	129	23	11	21	43	1.85
236764--236801	12	3.2	12	78	14	51	2	2	31	63	1.22
236756--236818	24	2.7	23	78	7	72	7	6	23	61	1.46
236930--236977	26	1.9	26	87	8	73	35	0	8	56	1.30
240512--240545	14	2.2	16	90	10	54	26	5	14	52	1.64
242651--242684	13	2.6	13	90	0	50	17	0	11	70	1.16
250522--250698	81	2.2	81	92	1	291	38	4	17	38	1.70
252894--253023	23	5.7	23	86	0	188	35	5	13	46	1.66
252894--253234	46	7.6	46	83	7	407	34	5	14	45	1.68
252894--253234	69	5.1	69	83	8	434	34	5	14	45	1.68
252987--253059	36	2.0	36	94	0	128	36	4	10	47	1.58
253023--253234	23	9.2	23	88	1	300	33	6	14	45	1.70
257386--257427	15	2.7	15	82	17	50	2	30	0	66	1.04
266347--266413	28	2.4	28	82	5	73	25	20	20	32	1.97
270089--270160	9	7.2	10	73	14	51	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270105--270190	41	2.0	43	85	14	117	34	0	1	63	1.02
270105--270185	40	2.0	41	86	11	114	34	0	1	64	1.02
274314--274350	17	2.2	17	95	0	65	32	0	8	59	1.27
274938--275005	7	10.4	7	78	9	56	66	1	1	30	1.10
274947--274998	3	16.7	3	77	15	52	65	1	0	32	1.04
274976--275005	15	2.0	15	93	0	51	76	0	0	23	0.78
281730--281757	6	4.7	6	100	0	56	35	32	0	32	1.58
284002--284040	3	13.0	3	100	0	78	66	0	33	0	0.92
286295--286616	39	8.3	39	78	6	276	23	31	18	25	1.98
286295--286555	117	2.2	117	88	2	373	23	31	19	24	1.98
286295--286594	117	2.6	117	84	4	311	23	31	20	25	1.98
286412--286646	78	3.0	78	81	0	281	24	29	20	25	1.99
287006--287091	17	5.1	17	81	0	109	37	3	3	55	1.34
287001--287099	6	16.8	6	72	15	64	39	3	3	54	1.31
287008--287091	34	2.5	34	88	0	123	36	3	3	55	1.34
287694--287755	7	9.6	7	77	10	53	64	1	1	32	1.13
287703--287754	3	16.7	3	77	15	52	65	1	0	32	1.04
288629--288906	29	9.6	29	71	11	144	35	23	3	37	1.73
288625--288943	58	5.5	58	72	11	183	35	24	3	37	1.71
288629--288942	29	10.9	28	72	13	131	35	23	3	37	1.71
288625--288876	87	2.9	85	78	10	212	35	23	3	37	1.71
295789--295891	51	2.0	51	98	0	197	46	7	24	21	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
301598--301627	15	2.0	15	100	0	60	40	6	33	20	1.78
316763--316800	3	13.0	3	84	15	53	31	0	0	68	0.90
316763--316800	16	2.6	14	88	12	51	31	0	0	68	0.90
317714--317788	24	3.1	24	96	0	132	22	12	10	54	1.67
319729--319779	24	2.1	24	96	0	93	21	11	9	56	1.63
322951--323491	134	3.9	142	75	12	468	28	13	15	43	1.84
326483--326516	17	2.0	17	100	0	68	29	5	35	29	1.81
326864--327046	87	2.1	86	80	8	192	37	11	8	42	1.71
327188--327244	17	3.1	17	78	14	60	28	1	0	70	0.98
327185--327244	10	6.3	10	74	16	56	28	1	0	70	0.97
327439--327602	86	1.9	85	82	7	204	34	5	16	43	1.71
327768--327806	18	2.2	18	95	0	69	23	10	12	53	1.69
342038--342082	21	2.0	23	87	8	67	26	8	6	57	1.54
344905--344995	29	3.2	29	69	9	78	39	19	17	23	1.92
344911--345124	57	3.8	57	83	3	252	35	17	21	26	1.95
344983--345124	28	5.0	28	69	8	90	35	14	23	26	1.94
351978--352015	18	2.1	18	95	0	67	34	0	2	63	1.09
353322--353721	149	2.7	146	80	7	450	30	1	15	53	1.48
353532--353576	22	2.1	21	84	15	58	20	0	8	71	1.12
353962--354003	21	2.0	21	85	0	57	47	21	14	16	1.82
360263--360308	19	2.5	18	82	6	56	41	0	6	52	1.27
364636--364662	4	6.8	4	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377868--377920	23	2.3	23	93	0	88	24	32	20	22	1.98
392716--393011	145	2.0	145	99	0	583	30	15	23	30	1.95
396042--396082	18	2.3	18	91	0	73	73	7	0	19	1.07
396359--396403	21	2.0	23	87	8	67	62	6	4	26	1.39
401800--401826	8	3.4	8	100	0	54	85	0	0	14	0.61
403949--404100	20	7.5	19	74	18	112	21	13	9	55	1.65
403894--404102	102	2.0	103	84	2	269	20	14	8	56	1.63
403989--404095	40	2.6	41	85	1	135	22	15	6	55	1.64
403886--404096	20	10.4	19	70	15	93	20	13	7	58	1.58
405166--405222	24	2.4	24	84	0	69	50	10	12	26	1.72
405178--405228	24	2.1	24	92	0	84	56	7	9	25	1.58
407362--407492	60	2.2	59	83	4	156	16	9	9	63	1.51
407410--407749	20	17.2	19	64	20	62	23	14	6	55	1.61
407448--407650	80	2.6	79	82	6	234	24	14	4	56	1.57
407518--407689	40	4.4	38	77	10	150	23	13	6	56	1.60
407562--407614	21	2.7	20	79	5	63	28	9	7	54	1.59
407507--407721	119	1.8	119	81	4	272	24	14	5	54	1.61
407519--407689	79	2.2	77	78	12	184	23	13	6	56	1.61
407665--407712	21	2.3	21	89	7	71	25	14	4	56	1.56
408070--408126	20	2.8	20	86	2	60	10	15	12	61	1.57
408070--408126	21	2.8	21	86	2	71	10	15	12	61	1.57
408080--408315	20	11.7	21	67	14	86	15	18	11	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408110--408280	60	2.8	60	79	6	148	14	18	12	53	1.72
408233--408315	40	2.1	38	84	8	105	19	13	10	56	1.66
409151--409184	17	2.0	17	88	11	52	41	8	17	32	1.80
409235--409272	18	2.0	20	85	10	53	31	0	5	63	1.17
409445--409492	19	2.5	19	89	0	69	66	0	8	25	1.19
409457--409493	9	4.0	9	86	6	56	72	0	2	24	0.97
414205--414262	17	3.3	18	83	9	75	50	5	1	43	1.35
415594--415653	29	2.1	29	100	0	120	51	8	20	20	1.72
416133--416165	12	2.8	12	100	0	66	18	24	48	9	1.76
419025--419262	51	4.6	51	83	4	264	30	22	14	32	1.94
422326--422529	51	4.0	50	80	6	223	29	24	13	31	1.94
423696--423864	71	2.4	70	86	3	232	36	25	14	24	1.93
427165--427381	101	2.2	101	86	5	314	41	14	11	33	1.82
435057--435120	27	2.4	27	86	2	85	50	7	4	37	1.52
439757--439810	28	1.9	28	96	0	99	29	12	31	25	1.93
447014--447043	15	2.0	15	93	0	51	43	6	6	43	1.57
449576--449671	41	2.3	41	90	0	156	35	27	8	29	1.86
449661--449699	17	2.3	17	86	0	51	46	23	12	17	1.83
456078--456159	32	2.7	29	75	9	76	26	40	17	15	1.89
462804--462859	10	5.9	9	83	10	51	57	1	0	41	1.09
462812--462862	5	10.4	5	83	12	70	58	1	0	39	1.09
473604--473714	34	3.2	34	76	6	116	26	21	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474622--474659	19	2.0	20	84	5	51	26	21	0	52	1.47
474725--474901	53	3.3	51	82	7	176	25	33	1	39	1.66
477886--477924	17	2.3	17	86	0	51	48	20	10	20	1.78
487530--487641	45	2.5	45	75	13	117	16	25	14	43	1.86
487530--487644	43	2.6	42	74	14	117	17	24	13	44	1.85
498950--499203	29	8.8	28	80	12	176	35	3	26	34	1.74
498966--499212	58	4.2	58	77	10	209	35	3	25	35	1.73
498934--499212	88	3.2	86	79	11	268	34	3	27	34	1.73
498922--499192	116	2.3	115	79	9	300	34	3	26	35	1.73
500925--501009	6	15.0	6	68	20	58	52	2	1	43	1.21

Tables:   1   2   3