genome.fa.s15237.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015237.1 Kokia drynarioides strain JFW-HI SEQ_130282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  810367

Tables:   1   2   3   

This is table  3  of  3  ( 352 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500946--501007	17	3.7	16	82	8	79	54	1	1	41	1.19
503149--503202	28	1.9	28	100	0	108	31	14	3	50	1.61
509931--510055	59	2.1	59	96	0	232	8	16	8	66	1.42
514104--514145	22	1.9	22	100	0	84	54	9	9	26	1.63
518578--518611	14	2.4	14	90	0	50	14	8	26	50	1.72
518596--518651	28	2.0	28	82	6	69	30	8	17	42	1.80
521334--521371	17	2.2	18	90	4	60	23	13	5	57	1.56
522487--522559	32	2.3	32	83	2	85	34	23	21	20	1.97
522775--522852	26	2.9	28	69	17	76	34	0	2	62	1.09
522883--523010	62	2.1	62	95	0	229	32	8	11	46	1.71
526589--526652	21	3.0	21	90	4	94	46	23	0	29	1.52
530467--530548	39	2.0	41	86	4	114	53	7	2	36	1.42
530782--530819	19	2.0	19	100	0	76	47	10	21	21	1.80
531889--531945	30	1.9	30	85	3	80	22	5	17	54	1.63
532554--532601	23	2.1	23	100	0	96	43	16	14	25	1.86
539059--539137	31	2.3	35	87	12	112	68	5	3	22	1.26
540757--540809	26	2.0	26	85	0	70	32	11	30	26	1.91
540771--540865	26	3.7	26	77	8	95	27	11	29	31	1.92
540806--540886	26	3.1	25	77	7	90	25	13	30	29	1.94
541223--541283	22	2.8	22	85	11	74	72	1	9	16	1.19
541249--541278	15	1.9	16	93	6	53	70	0	13	16	1.18
543660--543715	27	2.1	27	83	12	71	71	1	5	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546458--546518	22	2.8	22	87	7	81	72	1	11	14	1.20
546484--546513	15	1.9	16	93	6	53	70	0	13	16	1.18
553415--553480	30	2.2	31	86	8	91	22	13	13	50	1.77
556057--556094	20	1.9	20	100	0	76	60	0	5	34	1.19
556358--556383	2	13.0	2	100	0	52	50	0	0	50	1.00
566621--566666	12	3.8	12	75	18	51	0	19	0	80	0.71
566620--566680	23	2.5	24	82	15	72	3	21	0	75	0.94
566621--566678	30	2.0	29	83	16	75	1	20	0	77	0.86
571882--571947	34	1.9	34	81	6	80	46	12	19	21	1.82
575903--575954	24	2.2	24	86	13	72	1	25	0	73	0.94
575909--575954	18	2.4	19	82	17	60	2	23	0	73	0.94
576512--576558	17	2.8	17	80	6	51	48	12	21	17	1.79
586699--586763	30	2.2	30	88	0	94	43	41	9	6	1.61
586879--586924	24	1.9	24	86	0	65	32	43	2	21	1.65
586903--586988	33	2.6	33	96	0	154	31	44	3	20	1.69
590049--590151	42	2.4	42	78	1	107	26	10	15	47	1.78
590811--590849	2	20.0	2	94	5	71	48	0	0	51	1.00
592876--592988	56	2.0	57	98	1	219	28	14	3	53	1.57
600201--600238	19	2.1	18	90	5	58	42	13	21	23	1.88
606531--606847	30	10.8	30	81	5	290	37	3	26	32	1.73
606532--606847	59	5.4	58	77	8	264	37	3	25	32	1.73
607764--607814	26	2.0	26	84	7	68	23	1	0	74	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614706--614856	29	5.3	29	76	11	134	33	19	17	28	1.95
614712--614856	58	2.5	58	84	5	179	32	20	17	29	1.95
614712--614880	29	5.9	28	77	11	114	31	21	17	28	1.96
614755--614948	28	6.8	29	66	15	91	28	24	15	30	1.96
614844--614965	57	2.1	57	84	0	154	26	26	16	31	1.96
616588--616769	52	3.5	52	87	3	260	25	14	26	34	1.94
631806--631959	50	3.1	50	70	5	141	37	18	25	18	1.93
631771--632013	99	2.5	99	83	2	317	37	18	26	17	1.93
637498--637534	18	2.1	18	94	0	65	43	2	13	40	1.58
638071--638119	26	2.0	24	84	8	62	65	0	0	34	0.93
647150--647186	19	1.9	19	88	0	56	24	21	24	29	1.99
650050--650091	20	2.1	20	100	0	84	52	0	0	47	1.00
661999--662031	16	2.0	17	88	5	50	48	0	0	51	1.00
662237--662261	2	12.5	2	100	0	50	52	0	0	48	1.00
662947--662988	23	1.9	23	85	9	61	50	2	4	42	1.36
663548--663602	23	2.3	25	81	12	62	61	3	3	30	1.30
663719--663788	23	3.2	22	71	20	65	72	18	5	2	1.17
663909--663948	18	2.3	18	86	4	55	17	20	7	55	1.66
666414--666457	22	2.0	22	86	8	63	22	0	6	70	1.11
667268--667300	17	1.9	17	88	11	50	33	3	0	63	1.10
673530--673587	28	2.0	29	93	3	100	29	10	24	36	1.88
696567--696627	30	2.0	30	96	0	113	47	16	11	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699049--699106	15	3.7	15	74	17	64	51	1	0	46	1.11
699135--699186	24	2.2	24	82	6	61	42	0	0	57	0.98
699116--699240	61	2.0	62	89	1	189	44	0	3	51	1.23
699399--699444	16	2.9	16	86	0	65	39	19	0	41	1.52
699868--699904	12	3.1	12	100	0	74	35	16	16	32	1.91
701200--701243	19	2.3	20	80	7	56	56	2	2	38	1.24
704558--704699	71	2.0	71	98	0	275	24	16	20	38	1.93
714593--714618	4	6.5	4	100	0	52	76	0	0	23	0.78
721675--721789	12	10.1	12	74	9	71	66	23	4	5	1.30
721674--721798	44	2.8	44	79	3	135	67	21	5	5	1.33
721727--721780	11	4.7	11	81	6	54	68	22	5	3	1.26
725421--725473	24	2.2	24	89	0	79	41	9	30	18	1.82
730739--730777	6	6.5	6	87	0	51	46	0	30	23	1.53
736673--736711	6	6.5	6	87	0	51	46	0	30	23	1.53
740432--740484	19	2.8	19	82	0	70	22	28	18	30	1.98
743796--743836	23	1.9	22	85	14	59	68	7	0	24	1.15
744063--744105	19	2.3	19	88	8	61	62	0	2	34	1.08
745149--745212	33	1.9	33	81	9	76	45	6	4	43	1.50
745534--745558	2	12.5	2	100	0	50	52	0	0	48	1.00
746061--746085	12	2.1	12	100	0	50	40	0	16	44	1.47
748357--748393	16	2.3	16	90	9	58	75	5	0	18	0.99
748875--748918	20	2.3	19	80	11	54	68	2	0	29	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751832--751895	12	5.2	12	75	7	56	79	6	4	9	1.04
754069--754134	32	2.1	32	82	0	78	25	13	16	43	1.85
765724--765763	21	1.9	21	84	0	53	32	12	17	37	1.87
768579--769050	146	3.2	147	77	6	415	33	16	31	17	1.93
768581--769051	97	4.9	95	82	4	460	33	16	31	17	1.93
768579--769058	193	2.5	193	79	5	520	33	17	31	17	1.93
768579--769058	49	9.9	49	76	8	347	33	17	31	17	1.93
769340--770044	39	17.7	39	73	9	327	31	27	15	25	1.95
769341--770076	81	9.2	81	73	9	455	31	27	14	26	1.95
769340--770049	120	5.9	116	73	10	452	31	27	15	25	1.95
769345--770020	357	1.9	358	82	5	868	31	27	15	25	1.96
771989--772026	9	4.2	9	83	12	51	2	18	0	78	0.86
786061--786107	20	2.3	20	85	3	58	48	19	6	25	1.72
786780--786826	20	2.3	20	85	3	58	48	19	6	25	1.72
784711--786861	718	3.0	719	93	0	3620	33	22	16	27	1.95
792852--792980	57	2.2	58	81	10	140	48	5	18	27	1.70
793207--793255	23	2.2	22	88	3	71	40	0	4	55	1.19
800389--800521	11	11.7	11	70	7	52	23	5	7	63	1.41
801438--801489	27	2.0	26	88	3	77	76	1	5	15	1.05
801683--801715	14	2.3	15	89	5	50	51	0	9	39	1.34
806649--806835	51	3.6	51	77	7	189	26	24	16	33	1.96
809357--809662	58	5.3	59	79	8	238	34	3	26	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809465--809899	29	14.8	29	80	3	422	36	2	25	36	1.69
809465--809890	59	7.3	59	82	4	409	36	2	25	36	1.69

Tables:   1   2   3

The End!