genome.fa.s15266.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015266.1 Kokia drynarioides strain JFW-HI SEQ_130311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  514914

Tables:   1   2   3   

This is table  2  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269199--269240	22	1.9	22	90	9	68	19	4	19	57	1.58
274700--274919	110	2.0	110	95	0	395	27	20	25	26	1.99
277456--277598	58	2.4	59	94	1	243	52	7	8	31	1.60
277670--277732	33	1.9	33	86	0	90	12	15	33	38	1.86
279849--279880	16	2.0	17	88	11	50	37	15	28	18	1.92
281770--281804	16	2.2	16	100	0	70	42	0	11	45	1.40
282655--282761	38	2.8	38	82	2	126	28	11	24	35	1.90
284874--284924	18	2.8	19	82	11	70	33	1	0	64	1.05
284876--284924	17	2.7	18	87	9	73	32	2	0	65	1.04
284874--284934	18	3.4	18	71	13	54	31	1	1	65	1.12
299709--299803	17	5.5	17	78	1	91	34	2	7	55	1.39
299709--299797	34	2.6	34	80	0	106	33	2	6	57	1.37
301649--301957	29	10.5	29	71	14	145	35	24	2	37	1.68
301673--301957	59	4.9	58	79	11	219	35	24	2	38	1.67
301605--301779	88	2.0	89	86	3	246	33	24	2	40	1.67
301648--301948	88	3.4	85	77	11	252	35	24	2	37	1.68
301943--302013	28	2.5	28	79	6	72	32	25	9	32	1.89
308830--308874	21	2.2	21	92	4	74	35	22	13	28	1.92
309851--309883	12	2.6	13	90	4	50	57	0	9	33	1.30
310996--311032	18	2.1	18	100	0	74	32	5	16	45	1.70
311515--311582	29	2.3	30	80	7	77	27	8	27	35	1.87
311531--312102	29	19.4	28	70	19	269	32	2	27	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311546--311869	57	5.6	56	80	9	332	32	2	27	37	1.70
311727--312023	154	1.9	151	86	4	416	31	1	28	38	1.66
311869--312009	57	2.5	57	82	6	169	33	1	28	36	1.66
311958--312095	30	4.6	29	76	15	129	32	2	28	36	1.69
313217--313272	3	18.7	3	82	14	71	30	0	3	66	1.09
314020--314070	26	2.0	26	88	0	75	56	5	0	37	1.23
314006--314093	43	2.0	44	86	2	124	56	5	0	37	1.23
314961--315502	183	3.0	184	92	2	900	32	12	7	47	1.69
315521--315549	15	2.0	15	93	6	51	62	6	0	31	1.22
316693--316749	29	2.0	29	89	6	89	71	5	8	14	1.27
318562--318632	33	2.2	33	82	5	81	69	16	2	11	1.30
318616--318714	22	4.7	20	79	9	99	66	22	4	7	1.33
318575--318645	32	2.2	32	82	5	81	64	22	4	8	1.38
318568--318670	53	1.9	54	82	5	129	66	22	2	8	1.33
318607--318711	44	2.4	42	84	4	129	67	22	3	5	1.28
323127--323351	103	2.2	103	82	1	281	38	16	11	34	1.83
324751--324822	34	2.1	34	94	0	126	52	5	4	37	1.44
324928--324968	14	2.9	14	85	0	55	29	2	17	51	1.58
325624--325669	16	2.9	16	81	12	51	60	2	0	36	1.09
325624--325656	17	2.0	17	88	5	50	60	0	0	39	0.97
326757--326820	27	2.4	27	83	0	83	40	21	17	20	1.91
328776--328840	6	11.0	6	77	9	71	41	1	3	53	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328748--328856	17	6.3	17	82	7	130	40	1	3	54	1.29
328748--328856	35	3.1	34	82	8	123	40	1	3	54	1.29
328776--328839	24	2.7	26	83	13	84	40	1	3	54	1.25
329584--329656	30	2.4	30	81	9	85	47	4	4	43	1.41
330814--331113	30	10.1	28	73	13	167	38	21	3	37	1.69
330890--331114	59	3.8	60	77	11	164	39	21	1	36	1.64
343064--343629	207	2.7	205	85	3	713	36	18	22	22	1.94
343559--343677	49	2.4	49	80	4	125	34	15	25	25	1.94
343996--344118	18	7.1	16	76	11	102	39	1	3	55	1.26
344027--344105	6	13.3	6	76	7	81	43	1	2	53	1.22
343995--344121	17	7.3	17	81	7	148	40	1	3	55	1.25
344832--344904	30	2.4	30	81	9	85	47	4	4	43	1.41
346063--346298	29	8.1	29	80	8	205	36	22	1	38	1.64
346088--346299	87	2.4	86	80	9	250	35	22	1	40	1.63
350402--350438	16	2.2	18	85	9	51	40	5	0	54	1.24
352014--352046	2	17.0	2	93	6	59	51	0	0	48	1.00
352123--352156	17	2.0	17	88	11	52	58	0	0	41	0.98
352122--352159	16	2.3	16	83	16	51	60	0	0	39	0.97
364664--364703	15	2.6	16	88	7	57	45	0	0	55	0.99
364679--364732	20	2.4	23	82	14	69	46	0	1	51	1.11
364666--364737	36	2.0	36	86	2	99	45	0	1	52	1.09
365980--366008	14	2.1	14	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367348--367386	20	2.0	20	85	5	53	76	2	0	20	0.90
367346--367418	25	3.3	21	74	12	58	67	2	0	30	1.05
367374--367440	25	2.5	26	81	13	84	61	2	1	34	1.20
367778--367832	22	2.6	21	71	23	53	41	1	0	56	1.10
367803--367876	37	2.0	38	84	7	98	48	0	1	50	1.09
368282--368346	25	2.6	25	90	4	96	40	9	15	35	1.79
374970--375061	46	2.0	46	97	0	175	31	11	19	36	1.88
375726--375750	7	3.6	7	100	0	50	0	0	12	88	0.53
375809--376003	97	2.0	97	93	0	336	36	11	16	35	1.85
378310--378511	112	1.8	112	90	0	323	28	19	12	39	1.88
378960--379638	99	6.9	99	78	1	542	34	15	29	19	1.93
378960--379632	50	13.7	49	70	7	229	34	15	29	19	1.93
379067--379601	297	1.8	297	81	0	676	34	16	28	20	1.94
379453--379645	49	3.9	49	75	7	117	34	17	29	19	1.94
379872--380332	42	11.3	42	80	7	479	31	26	17	25	1.97
379864--380319	81	5.6	81	81	6	406	32	25	17	24	1.97
379872--380314	121	3.6	122	82	6	477	31	25	18	25	1.97
379953--380314	80	4.4	81	80	8	315	31	24	19	25	1.98
380716--380762	16	2.9	16	83	3	58	82	12	2	2	0.84
382063--382105	20	2.2	20	83	8	52	18	2	4	74	1.10
384320--384419	30	3.4	28	72	10	83	36	27	1	36	1.64
384470--384525	29	1.9	29	96	0	103	33	28	7	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384905--385108	104	2.0	103	87	0	291	31	13	18	36	1.89
391131--391160	3	10.0	3	100	0	60	33	0	0	66	0.92
392215--392533	159	2.0	159	96	1	595	43	15	12	28	1.83
392877--392986	55	2.0	55	90	0	175	17	23	21	37	1.94
394121--394191	23	3.1	22	86	8	97	29	23	0	46	1.53
394131--394192	6	10.5	6	76	10	56	29	22	0	48	1.51
404296--404338	2	21.5	2	90	0	68	48	2	0	48	1.14
406470--406522	25	2.0	27	86	13	76	67	1	0	30	1.01
409032--409082	26	2.0	26	84	0	66	47	9	9	33	1.70
412326--412385	28	2.1	28	90	0	93	56	11	6	25	1.59
417153--417191	21	1.9	20	84	5	51	43	25	0	30	1.55
420639--420735	11	9.0	11	70	16	69	38	2	2	57	1.22
420640--420737	6	17.0	6	72	12	80	39	2	2	56	1.23
420640--420737	17	5.4	17	75	19	90	39	2	2	56	1.23
420651--420736	23	3.7	23	77	9	86	39	2	2	55	1.25
422651--422932	59	4.8	58	76	9	182	38	23	2	35	1.68
422647--422933	88	3.2	86	79	11	262	37	24	2	35	1.69
422647--422931	29	9.7	29	74	13	192	37	24	2	35	1.69
422719--422940	59	3.8	59	81	7	222	37	24	2	35	1.70
422719--422967	59	4.2	57	77	13	211	36	24	3	35	1.73
425367--425402	18	2.0	18	100	0	72	27	11	16	44	1.82
432006--432597	206	2.9	206	92	1	999	33	18	23	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432439--432645	48	4.5	48	69	14	157	33	15	27	23	1.95
432441--432731	134	2.2	134	87	0	420	34	16	25	24	1.95
434104--434149	22	2.0	22	87	4	65	58	4	15	21	1.54
434291--434341	25	2.0	25	96	0	93	31	27	33	7	1.85
434997--435298	29	10.2	28	78	11	223	38	27	1	31	1.68
434997--435298	59	5.1	58	79	5	286	38	27	1	31	1.68
434999--435298	88	3.4	87	75	12	247	39	27	2	31	1.68
441711--441756	24	1.9	24	95	0	83	47	19	0	32	1.50
447854--447885	17	1.9	17	93	6	57	53	0	0	46	1.00
447971--448033	24	2.6	25	85	5	85	50	9	1	38	1.44

Tables:   1   2   3