Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015266.1 Kokia drynarioides strain JFW-HI SEQ_130311, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  514914

Tables:   1   2   3   

This is table  3  of  3  ( 291 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
450831--450876
24
1.9
23
86
8
65
56
6
4
32
1.45
451898--451964
11
5.5
11
71
25
55
5
11
0
82
0.84
451923--451964
19
2.3
17
88
12
57
7
9
0
83
0.81
451900--451975
14
5.4
14
75
13
50
6
11
1
80
0.96
451937--451978
14
2.7
16
78
17
52
4
14
2
78
1.01
452901--452950
17
2.8
17
84
6
64
74
0
4
22
0.99
452977--453006
15
2.0
15
93
0
51
30
6
0
63
1.20
463894--463934
21
1.9
22
85
5
57
31
2
7
58
1.38
465038--465099
17
3.7
17
81
12
83
45
1
1
51
1.20
465116--465141
13
2.0
13
100
0
52
46
23
7
23
1.78
465761--465829
3
23.0
3
77
11
61
60
0
0
39
0.97
465748--465792
19
2.4
19
88
0
72
48
0
0
51
1.00
466946--467294
29
12.0
28
72
15
201
32
25
3
37
1.74
467072--467242
57
3.0
59
84
5
165
33
25
4
36
1.75
466961--467241
86
3.2
85
77
10
230
32
25
3
38
1.72
478535--478573
17
2.3
17
86
0
51
15
10
25
48
1.76
480666--480712
24
2.0
24
87
8
69
38
6
8
46
1.60
484328--484375
25
1.9
25
91
0
78
33
6
8
52
1.57
484339--484386
25
2.0
25
87
4
71
35
6
8
50
1.58
485536--485570
3
12.0
3
93
6
63
65
0
0
34
0.93
485532--485570
20
2.0
19
95
5
69
66
0
0
33
0.92
491000--491028
9
3.2
9
100
0
58
58
0
0
41
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
490989--491028
18
2.4
16
87
8
53
52
0
0
47
1.00
491887--491946
4
14.5
4
86
6
75
68
0
31
0
0.90
491887--491946
25
2.4
25
88
5
86
68
0
31
0
0.90
491915--491959
20
2.2
21
96
4
83
60
0
40
0
0.97
494999--495085
4
21.5
4
77
11
79
0
34
0
65
0.93
494999--495077
17
4.6
17
76
16
74
0
35
0
64
0.94
494999--495086
20
4.6
19
82
12
117
0
35
0
64
0.94
495323--495347
13
1.9
13
100
0
50
8
4
16
72
1.24
495646--495680
18
1.9
18
88
0
52
31
5
20
42
1.75
499080--499120
19
2.1
20
86
4
57
51
4
2
41
1.36
499070--499134
15
4.2
15
68
14
51
49
3
1
46
1.27
499289--499315
7
3.9
7
100
0
54
85
0
0
14
0.61
500253--500384
40
3.3
41
83
3
169
35
19
21
22
1.96
500432--500612
36
4.7
38
75
14
158
31
18
27
23
1.97
500439--500629
77
2.5
77
90
0
301
31
16
27
24
1.96
501366--501482
57
2.0
58
82
8
141
38
11
8
41
1.71
502195--502235
18
2.2
20
82
8
50
60
7
2
29
1.36
504712--504750
8
5.0
8
90
6
53
53
0
0
46
1.00
504712--504750
15
2.5
16
83
8
53
53
0
0
46
1.00
504737--504831
26
3.5
26
71
20
77
48
6
2
43
1.40
504773--504900
22
5.4
23
67
21
86
47
3
0
47
1.26
504815--504897
12
7.1
12
70
17
68
48
2
1
48
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
504817--505046
62
4.0
57
74
17
199
46
6
1
45
1.38
504822--505058
112
2.1
109
87
6
336
45
6
1
45
1.39
505023--505059
16
2.3
16
90
0
56
32
2
2
62
1.23
507792--507910
43
2.8
43
79
5
141
20
10
32
36
1.86
508090--508135
22
2.1
22
100
0
92
39
23
8
28
1.84
508093--508144
22
2.5
21
90
9
81
36
25
7
30
1.84
511731--511766
12
3.0
12
100
0
72
8
33
8
50
1.63

Tables:   1   2   3

The End!