genome.fa.s15269.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015269.1 Kokia drynarioides strain JFW-HI SEQ_130314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  664642

Tables:   1   2   3   

This is table  2  of  3  ( 278 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267634--267776	49	3.1	49	65	24	128	28	9	5	56	1.53
270271--270315	3	15.0	3	100	0	90	33	0	0	66	0.92
270305--270352	22	2.1	23	81	11	55	29	2	6	62	1.31
276008--276187	45	4.0	46	82	5	183	33	22	17	26	1.96
276008--276187	91	2.0	89	85	4	245	33	22	17	26	1.96
277602--277688	28	3.0	30	77	8	74	31	16	2	50	1.57
277637--277714	28	2.7	29	84	7	88	28	14	1	56	1.46
277641--277726	28	3.1	28	79	12	81	25	13	1	59	1.42
277765--277809	8	5.5	8	85	12	56	26	2	0	71	0.98
277765--277809	18	2.7	17	80	12	58	26	2	0	71	0.98
281703--281737	18	1.9	18	88	0	52	71	0	2	25	1.00
281854--281894	11	3.4	12	75	24	50	31	4	4	58	1.40
292609--293018	205	2.0	205	97	0	766	40	12	16	30	1.86
306548--306591	22	2.0	22	86	8	63	25	0	0	75	0.81
310346--310395	22	2.3	22	89	0	73	6	18	0	76	0.99
311346--311383	6	6.3	6	87	0	58	78	0	2	18	0.86
311345--311387	12	3.7	12	87	3	61	74	0	2	23	0.93
311974--312114	43	3.3	43	82	2	185	26	26	20	25	1.99
314983--315011	13	2.1	14	93	6	51	86	0	13	0	0.58
315346--315443	41	2.4	41	87	3	135	18	28	21	31	1.97
315424--315502	29	2.9	27	83	10	90	16	27	20	35	1.94
315450--315505	29	1.9	29	100	0	112	14	26	21	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315479--315675	41	4.8	41	86	0	259	20	29	18	31	1.96
315315--315581	136	2.0	133	86	5	367	17	27	21	32	1.96
315479--315697	82	2.7	82	80	4	246	20	29	17	33	1.95
315479--315709	123	1.9	123	82	0	293	19	28	17	34	1.95
317271--317314	22	2.0	22	95	0	79	15	25	13	45	1.83
320658--320690	6	5.5	6	96	0	57	30	0	3	66	1.06
321376--321422	25	2.0	23	83	8	58	55	4	4	36	1.39
321526--321565	16	2.4	17	87	4	55	50	2	7	40	1.44
332585--332646	22	2.8	22	75	15	65	19	29	16	35	1.93
333356--333564	104	2.0	104	99	0	409	33	22	18	25	1.96
337408--337458	26	2.0	26	92	0	84	37	9	25	27	1.87
337611--337682	34	2.1	34	92	0	117	52	0	16	30	1.44
337822--337860	18	2.2	18	90	9	62	25	10	15	48	1.76
337842--337926	35	2.5	31	74	17	80	45	15	9	29	1.77
340224--340375	29	5.4	29	79	10	163	32	28	10	28	1.90
340176--340375	84	2.4	84	83	1	258	33	28	9	28	1.88
340240--340372	55	2.3	58	81	7	166	32	28	11	27	1.91
340406--340467	22	2.8	22	73	4	63	32	25	19	22	1.97
351088--351124	16	2.4	16	90	4	58	40	2	2	54	1.29
351097--351166	26	2.5	28	79	6	81	54	1	1	42	1.18
351119--351153	16	2.1	17	94	5	63	60	0	0	40	0.97
362823--362866	14	2.8	16	80	16	56	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363132--363162	12	2.6	12	89	0	53	58	0	32	9	1.31
363831--363929	31	3.2	31	80	0	126	42	14	8	35	1.75
364146--364178	6	5.7	6	85	7	50	0	18	0	81	0.68
364146--364191	24	2.0	23	86	4	65	4	19	0	76	0.96
364613--364707	31	3.1	30	77	10	104	35	10	11	42	1.76
373911--373942	2	16.0	2	100	0	64	50	0	50	0	1.00
381472--381504	7	4.7	7	100	0	66	12	0	57	30	1.35
387220--387395	95	1.9	95	91	2	291	25	17	22	35	1.95
397490--397726	52	4.6	52	89	1	352	26	14	23	35	1.93
397490--397726	103	2.3	104	90	1	361	26	14	23	35	1.93
402995--403231	52	4.6	52	89	1	334	25	15	23	35	1.94
402995--403231	103	2.3	104	87	1	334	25	15	23	35	1.94
409428--409481	27	2.0	27	85	7	74	38	1	1	57	1.20
409428--409470	12	3.3	12	81	15	50	39	2	0	58	1.11
409440--409501	14	4.4	15	75	19	53	41	1	1	54	1.19
410686--410765	27	3.0	27	94	3	135	18	27	28	25	1.98
411572--411605	3	11.3	3	93	0	59	64	0	2	32	1.08
413707--413737	9	3.4	9	95	0	53	54	0	25	19	1.44
418028--418098	27	2.6	27	88	0	97	19	22	28	29	1.98
418550--418592	13	3.3	13	80	0	50	39	6	18	34	1.78
430180--430222	18	2.4	18	85	14	54	58	2	2	37	1.24
433034--433076	19	2.3	19	84	8	52	58	4	0	37	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434587--434624	6	6.3	6	100	0	76	84	0	0	15	0.63
435607--435653	21	2.2	21	84	0	58	25	10	17	46	1.79
444837--444863	8	3.4	8	100	0	54	44	14	0	40	1.46
449113--449148	16	2.2	16	90	0	54	77	2	8	11	1.08
449935--449977	19	2.3	19	84	8	52	58	6	0	34	1.25
454063--454198	42	3.3	42	92	5	231	23	25	8	41	1.83
459250--459289	18	2.2	18	86	0	53	37	20	20	22	1.94
465740--465779	21	1.9	21	85	10	55	67	5	27	0	1.11
465749--465787	18	2.1	19	85	4	53	69	7	23	0	1.14
465887--465925	17	2.4	17	91	4	62	12	10	17	58	1.61
484153--484628	240	2.0	238	90	2	747	42	15	6	36	1.71
485672--486273	157	4.0	151	87	5	817	43	9	3	43	1.53
485935--485996	31	2.0	32	81	9	74	30	6	1	61	1.31
485689--486067	50	7.4	50	65	18	147	44	10	3	42	1.54
485666--486364	309	2.2	309	83	7	824	43	10	3	43	1.54
487147--487563	42	9.9	42	87	2	568	36	24	19	19	1.95
487965--488003	16	2.6	16	88	8	55	2	10	2	84	0.81
487964--488013	24	2.1	24	85	7	66	4	8	4	84	0.87
491562--492164	301	2.0	301	94	1	1048	27	25	12	35	1.91
492716--492788	35	2.1	35	100	0	146	19	17	19	43	1.88
496403--496432	12	2.5	12	94	0	51	50	10	26	13	1.73
501246--501922	152	4.4	151	80	11	694	43	9	3	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501550--501843	151	2.0	140	81	10	333	45	9	4	41	1.55
501851--501909	22	2.6	22	81	2	64	44	8	1	45	1.44
502221--502251	16	1.9	16	93	0	53	19	12	6	61	1.53
502702--502746	19	2.4	19	81	7	56	37	0	4	57	1.19
503539--503596	21	2.7	22	89	7	84	12	6	3	77	1.09
512627--512673	21	2.2	22	92	3	78	10	8	6	74	1.22
519573--519601	12	2.3	13	94	5	51	37	0	62	0	0.96
520950--521034	40	2.1	40	84	0	107	51	4	21	22	1.66
521775--521812	13	2.9	13	88	0	58	39	2	23	34	1.69
534666--534707	21	2.0	22	86	13	61	30	16	0	52	1.44
534707--534740	2	17.0	2	100	0	68	50	0	0	50	1.00
538063--538088	13	2.0	13	100	0	52	38	7	0	53	1.30
539188--539218	15	2.1	15	100	0	62	12	19	19	48	1.81
542393--542430	20	1.9	20	88	0	58	21	23	2	52	1.59
542661--542700	16	2.5	16	87	0	62	40	5	0	55	1.22
542662--542746	12	7.4	12	71	24	51	34	2	1	62	1.16
542662--542745	21	3.8	21	77	13	80	34	2	1	61	1.16
542695--542804	57	1.9	56	82	12	136	34	1	2	60	1.21
542777--542853	39	2.0	39	89	0	118	22	7	1	68	1.22
542776--542857	19	4.2	19	74	13	69	23	7	1	68	1.22
547236--547270	17	2.1	17	94	0	61	37	2	11	48	1.54
547767--547793	12	2.2	12	100	0	54	48	14	7	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557095--557124	6	5.2	6	96	4	53	0	16	13	70	1.18
557792--557827	18	2.1	18	89	5	56	66	5	0	27	1.13
558753--558796	14	2.8	16	80	16	56	52	0	0	47	1.00
559009--559035	6	4.5	6	100	0	54	51	0	33	14	1.43
559189--559368	89	2.0	89	98	0	351	48	14	11	25	1.77
560123--560170	2	24.0	2	100	0	96	50	0	0	50	1.00
567218--567373	77	2.0	77	98	0	303	37	25	13	23	1.91
570585--570612	14	2.0	14	100	0	56	21	21	0	57	1.41
570596--570738	59	2.4	60	85	3	200	23	17	9	48	1.77
570895--571067	90	1.9	90	89	2	267	44	12	19	24	1.84

Tables:   1   2   3