Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015269.1 Kokia drynarioides strain JFW-HI SEQ_130314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  664642

Tables:   1   2   3   

This is table  3  of  3  ( 278 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
571324--571356
10
3.3
10
84
16
50
72
0
0
27
0.85
572730--572774
22
2.1
21
84
15
58
37
4
4
53
1.41
573571--573610
21
2.0
20
85
9
55
47
7
0
45
1.31
580757--580781
13
1.9
13
100
0
50
0
0
16
84
0.63
593675--593708
16
2.2
15
89
5
50
23
2
0
73
0.97
594255--594319
32
2.0
32
96
0
121
55
10
6
27
1.58
594968--595025
25
2.2
27
76
17
68
44
8
13
32
1.75
597399--597445
24
2.0
24
91
8
78
46
8
6
38
1.60
597411--597462
24
2.2
24
85
0
68
53
5
3
36
1.43
602329--602369
18
2.3
18
87
8
57
14
51
14
19
1.77
602779--602805
2
13.5
2
100
0
54
51
0
0
48
1.00
603739--603832
30
3.2
29
78
4
82
41
18
1
39
1.57
624542--624611
29
2.4
28
80
13
63
31
1
27
40
1.65
624568--625020
29
15.4
29
74
12
315
33
3
28
34
1.75
624542--625020
59
8.2
56
79
9
355
33
3
28
34
1.75
624685--625020
29
11.4
29
83
6
351
34
2
27
35
1.72
625717--625763
24
1.9
24
83
12
60
23
17
2
57
1.50
626902--626954
17
3.2
16
76
7
52
41
1
1
54
1.22
626922--627056
17
7.6
17
89
3
144
57
2
0
38
1.19
626927--627044
38
3.3
34
86
6
65
57
1
0
39
1.15
626927--627044
6
19.7
6
71
10
89
57
1
0
39
1.15
626930--627047
11
10.5
11
68
18
57
58
1
0
38
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
626942--627049
19
5.9
19
89
7
154
61
1
0
36
1.13
627574--627914
158
2.2
158
83
1
423
20
20
21
37
1.95
639627--639808
96
1.9
96
82
8
228
37
13
17
31
1.88
640143--640285
58
2.4
57
87
2
178
36
3
27
32
1.74
640148--640328
30
6.2
30
85
6
203
38
3
25
32
1.74
641469--641516
21
2.2
22
92
3
80
25
6
8
60
1.49
642198--642296
33
2.9
34
82
10
103
49
3
3
44
1.33
642233--642296
6
10.8
6
73
9
60
53
1
3
42
1.26
642198--642293
17
5.5
17
79
8
70
47
3
3
45
1.34
642245--642297
19
2.9
18
88
5
81
56
1
3
37
1.28
652244--652309
30
2.2
30
83
8
80
45
0
3
51
1.16
657257--657281
3
8.3
3
100
0
50
64
0
0
36
0.94
657478--657535
18
3.3
18
85
2
64
24
6
3
65
1.33
657643--657710
24
2.8
23
82
12
84
45
26
1
26
1.62
663702--663726
2
12.5
2
100
0
50
48
0
0
52
1.00
664554--664613
23
2.7
23
75
12
61
43
3
1
51
1.28

Tables:   1   2   3

The End!