genome.fa.s15270.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015270.1 Kokia drynarioides strain JFW-HI SEQ_130315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1190338

Tables:   1   2   3   

This is table  1  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50--83	7	5.0	7	85	7	52	44	0	0	55	0.99
688--758	15	4.7	15	76	0	70	18	21	26	33	1.96
695--767	30	2.5	30	90	2	121	13	20	27	38	1.90
793--854	17	3.6	17	91	2	88	50	4	0	45	1.23
11820--11870	20	2.5	20	84	6	68	35	7	13	43	1.73
12039--12078	13	3.2	13	82	10	57	32	7	2	57	1.40
15960--16185	123	1.8	125	86	1	330	40	7	11	40	1.71
18868--18925	27	2.2	25	82	8	71	41	1	6	50	1.39
18875--18930	27	2.1	26	90	3	85	42	1	5	50	1.35
20144--20193	20	2.5	20	80	9	57	46	2	16	36	1.58
26858--27022	82	2.0	83	93	1	287	34	20	12	32	1.90
30706--31130	212	2.0	212	99	0	841	27	21	18	32	1.97
34399--34425	7	3.9	7	100	0	54	55	0	44	0	0.99
48553--48605	21	2.5	21	81	0	70	24	11	26	37	1.89
53368--53545	26	6.8	26	70	7	137	26	16	23	34	1.95
53375--53520	78	1.9	78	81	2	177	28	15	22	33	1.95
63516--63626	58	1.9	59	88	1	170	22	21	10	45	1.83
72028--72098	31	2.3	31	83	11	85	21	14	21	43	1.87
73907--73984	38	2.1	36	86	9	104	55	6	5	33	1.48
76042--76074	17	2.0	17	88	5	50	27	9	6	57	1.53
79104--79146	13	3.1	14	84	12	54	60	0	0	39	0.97
80526--80572	23	2.0	25	83	8	62	10	12	4	72	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83878--83932	24	2.3	24	96	0	101	5	10	18	65	1.42
84817--84856	20	2.1	20	86	9	57	15	5	15	65	1.44
90837--90930	40	2.4	40	87	1	127	27	22	17	32	1.96
92440--92511	13	5.5	13	83	0	99	38	19	0	41	1.52
92424--92511	26	3.3	26	79	4	97	38	19	0	42	1.51
92737--93037	45	6.7	46	80	6	314	22	21	14	40	1.90
114071--114203	25	5.4	25	84	1	162	42	20	7	29	1.79
117989--118041	27	2.0	27	84	0	70	22	22	28	26	1.99
119918--119963	14	3.4	14	74	14	51	56	0	0	43	0.99
119905--119978	28	2.6	28	83	10	89	52	0	2	44	1.15
121034--121068	15	2.2	16	90	5	54	51	0	0	48	1.00
121032--121070	16	2.4	17	83	12	55	51	0	0	48	1.00
122104--122133	15	2.0	15	100	0	60	40	0	33	26	1.57
122371--122434	31	2.1	31	88	2	94	43	4	7	43	1.54
125232--125278	17	2.5	20	83	13	64	27	4	4	63	1.31
125322--125443	58	2.0	60	82	6	149	37	4	18	38	1.73
131416--131502	9	9.0	10	74	13	58	65	2	2	29	1.17
131408--131497	19	4.8	18	73	12	65	66	1	3	28	1.14
131404--131505	9	10.9	9	68	18	57	64	1	2	30	1.19
131404--131505	28	3.6	27	70	13	71	64	1	2	30	1.19
131628--131698	28	2.6	27	78	14	74	57	1	4	36	1.27
132512--132610	10	10.6	9	69	18	60	32	2	3	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132559--132601	19	2.2	20	87	4	61	25	0	4	69	1.07
132565--132603	19	2.1	19	95	0	69	25	0	5	69	1.09
135364--135411	20	2.4	21	82	10	64	41	6	20	31	1.77
135618--135671	20	2.7	20	91	0	81	27	9	35	27	1.87
139180--139266	28	3.0	28	78	8	102	32	14	9	43	1.77
139449--139500	16	3.2	16	80	0	50	36	5	26	30	1.80
139482--139576	44	2.1	46	84	7	124	28	5	29	36	1.79
139710--139783	38	2.0	37	89	2	112	47	2	0	50	1.15
139731--139810	39	2.1	38	81	6	90	52	2	2	42	1.28
141478--141541	27	2.4	27	97	0	119	20	21	15	42	1.89
154661--154700	2	20.0	2	100	0	80	50	0	0	50	1.00
155790--155821	3	10.7	3	100	0	64	65	0	0	34	0.93
157123--157392	135	2.0	135	94	0	468	32	20	14	32	1.92
157630--157678	24	2.0	24	100	0	98	24	12	38	24	1.90
157892--157916	11	2.3	11	100	0	50	44	8	12	36	1.71
158109--158137	12	2.3	13	94	5	51	10	13	0	75	1.04
158053--158195	63	2.2	64	80	10	166	25	16	5	51	1.66
165922--165989	24	2.8	24	72	0	64	26	17	25	30	1.97
166265--166289	11	2.3	11	100	0	50	20	0	32	48	1.50
175996--176026	16	1.9	16	93	0	53	61	0	22	16	1.34
177403--177512	26	4.2	26	88	0	121	33	16	21	28	1.95
177412--177690	26	11.2	26	69	16	106	31	16	23	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177472--177606	45	3.0	45	84	0	171	32	14	23	28	1.95
177566--177671	55	1.9	54	88	0	149	33	16	23	25	1.96
204483--204528	9	5.1	9	91	0	74	47	13	10	28	1.76
204541--204593	21	2.4	22	84	6	63	28	11	0	60	1.31
204541--204593	23	2.4	22	81	6	54	28	11	0	60	1.31
205033--205078	19	2.5	18	82	6	56	41	0	6	52	1.27
237720--237770	24	2.1	24	92	0	84	21	11	11	54	1.68
241120--241174	27	2.0	27	86	6	76	43	16	14	25	1.86
241727--241765	20	2.0	20	84	0	51	30	10	10	48	1.70
242045--242112	28	2.4	28	82	7	75	51	0	0	48	1.00
247300--247338	17	2.2	18	86	13	55	53	2	12	30	1.52
247431--247472	16	2.5	17	84	7	59	50	0	9	40	1.35
248197--248247	21	2.3	23	80	16	63	52	19	5	21	1.66
255041--255067	2	13.5	2	100	0	54	0	0	48	51	1.00
264811--264856	20	2.3	20	89	10	69	58	6	0	34	1.24
264871--264908	20	1.9	20	88	0	58	55	2	2	39	1.28
265718--265750	17	1.9	17	88	11	50	27	0	6	66	1.15
266100--266134	17	2.1	17	89	10	54	62	2	5	28	1.32
266697--266750	22	2.5	22	93	0	90	18	25	0	55	1.43
274609--274698	45	2.0	45	93	0	153	38	11	25	24	1.88
278948--279025	6	13.0	6	83	0	57	21	47	19	11	1.81
280648--280687	3	13.3	3	100	0	80	32	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282039--282215	27	6.7	27	83	3	200	24	14	24	36	1.93
282041--282215	54	3.3	54	84	3	223	24	14	24	36	1.93
283317--283365	22	2.3	20	81	18	64	36	24	24	14	1.93
283323--283365	22	2.0	22	90	9	70	34	25	23	16	1.95
285818--285864	21	2.2	21	92	0	76	42	10	23	23	1.85
296161--296210	25	1.9	27	84	8	68	34	14	6	46	1.69
310587--310619	16	2.1	16	94	5	59	30	0	3	66	1.06
311244--311281	3	12.7	3	100	0	76	31	0	0	68	0.90
316676--316757	27	3.1	27	85	7	123	21	15	25	36	1.94
316684--316802	25	4.7	25	82	4	130	23	17	26	32	1.97
316680--316784	52	2.0	52	90	0	165	21	17	25	35	1.95
319471--319619	80	1.9	80	82	2	192	33	23	18	24	1.97
332026--332050	12	2.1	12	100	0	50	40	16	8	36	1.77
334888--334931	18	2.4	18	84	0	61	9	31	9	50	1.65
344708--344746	17	2.2	18	86	9	53	71	0	28	0	0.86
346423--346474	8	6.3	9	79	20	53	80	0	19	0	0.71
346422--346473	13	3.6	14	82	15	61	80	0	19	0	0.71
346422--346474	19	2.7	20	85	2	72	81	0	18	0	0.70
348506--348553	19	2.5	20	75	21	50	54	0	0	45	0.99
356204--356277	22	3.4	22	66	7	69	47	1	22	28	1.60
356201--356291	44	2.1	44	100	0	182	43	2	19	34	1.63
365701--365749	17	2.9	17	96	0	89	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367476--367521	22	2.1	22	91	0	74	23	0	8	67	1.18
368866--368906	15	2.8	15	82	14	50	2	21	0	75	0.92
369655--369693	20	2.0	20	89	0	60	0	30	12	56	1.37
369655--369700	20	2.2	20	84	3	56	2	30	10	56	1.46
373529--373561	16	2.1	16	100	0	66	63	0	12	24	1.28
373641--373862	110	2.0	110	93	0	381	32	19	14	33	1.92
377168--377275	54	2.0	54	100	0	216	27	22	25	24	2.00
382113--382175	24	2.6	25	75	10	67	50	1	3	44	1.27
390177--390217	8	5.2	8	80	16	50	56	0	0	43	0.99
390181--390230	15	3.3	15	83	10	66	54	0	2	44	1.11

Tables:   1   2   3