genome.fa.s15270.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015270.1 Kokia drynarioides strain JFW-HI SEQ_130315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1190338

Tables:   1   2   3   

This is table  3  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881364--881420	29	1.9	30	85	7	80	63	7	3	26	1.36
882691--882734	19	2.4	19	92	3	72	63	13	13	9	1.51
889678--889716	6	6.5	6	96	0	69	53	28	0	17	1.44
899793--899848	29	1.9	29	85	0	76	57	10	3	28	1.49
906532--906576	20	2.2	21	84	11	58	55	0	4	40	1.20
906531--906578	21	2.3	22	79	17	57	56	0	4	39	1.19
921245--921273	2	15.0	2	92	7	51	48	0	0	51	1.00
924907--924941	16	2.1	18	89	10	56	68	2	0	28	1.04
927925--927982	23	2.5	22	81	8	71	43	1	5	50	1.35
928195--928224	15	2.0	15	100	0	60	33	0	13	53	1.40
934302--934364	22	3.0	22	75	22	64	47	4	41	6	1.50
938620--938715	47	2.0	46	82	7	113	29	12	8	50	1.69
938996--939024	3	9.7	3	100	0	58	34	65	0	0	0.93
955814--955847	17	1.9	18	94	5	61	17	5	11	64	1.45
956638--956772	30	4.6	28	75	13	119	42	24	1	31	1.64
956638--956912	29	9.3	29	69	17	129	38	26	2	32	1.70
956677--956901	59	3.8	59	79	10	219	38	25	2	32	1.70
956638--956908	30	9.2	29	68	19	109	39	25	2	32	1.70
960445--960531	31	2.9	31	83	10	117	29	10	31	28	1.90
960494--960888	59	6.7	59	80	7	439	34	7	26	31	1.83
960525--960888	29	12.5	27	66	20	105	34	6	26	31	1.83
960661--960751	30	3.1	29	74	15	87	30	4	29	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960665--960760	28	3.3	27	78	15	86	34	3	30	32	1.73
960494--960892	176	2.3	175	86	5	549	34	7	27	31	1.83
960494--960865	117	3.2	117	80	7	450	34	6	27	30	1.83
960846--960990	30	4.9	28	73	13	87	39	4	24	32	1.74
960610--960980	176	2.1	176	80	10	411	36	5	25	31	1.80
961966--962028	23	2.7	22	80	11	63	44	3	1	50	1.27
962012--962040	3	9.7	3	100	0	58	34	0	0	65	0.93
962827--962927	6	17.0	6	66	13	57	49	2	3	43	1.36
962869--962923	18	3.1	18	86	5	67	58	3	3	34	1.33
962891--962941	24	2.1	24	88	0	75	56	1	3	37	1.29
962896--962951	12	4.9	11	75	12	51	57	1	3	37	1.27
962849--962923	17	4.4	17	80	6	80	53	4	2	40	1.34
963809--963859	23	2.2	24	82	10	61	29	25	0	45	1.54
973409--973458	21	2.5	20	80	6	55	44	12	20	24	1.85
973751--973791	19	2.2	19	90	0	64	51	0	2	46	1.14
973877--975335	342	4.3	343	95	0	2562	32	21	11	34	1.89
973877--975335	685	2.1	687	94	0	2564	32	21	11	34	1.89
976321--976356	15	2.4	15	90	0	54	33	0	5	61	1.19
978206--978242	9	4.1	9	96	0	65	0	18	67	13	1.23
989943--989997	28	1.9	29	85	10	78	45	0	14	40	1.45
993800--993849	15	3.2	16	73	18	52	42	0	2	56	1.11
993809--993853	22	2.0	23	86	4	65	44	0	2	53	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995955--995988	3	11.3	3	93	0	59	64	2	0	32	1.08
997022--997055	16	2.1	16	94	0	59	17	8	5	67	1.37
1005896--1005923	2	14.0	2	100	0	56	50	0	0	50	1.00
1006365--1006425	27	2.2	27	82	8	70	60	3	1	34	1.23
1006429--1006506	21	3.9	20	75	11	63	58	5	1	34	1.28
1006365--1006548	19	9.8	18	65	16	63	59	4	1	34	1.27
1021931--1021956	2	13.0	2	100	0	52	50	0	0	50	1.00
1030701--1030726	9	2.9	9	100	0	52	7	34	57	0	1.27
1039898--1039936	21	2.0	20	85	10	53	64	2	0	33	1.08
1041894--1041953	29	2.0	30	84	12	79	51	6	1	40	1.38
1042537--1042567	14	2.1	15	94	5	55	29	0	6	64	1.18
1054599--1054750	76	2.0	76	98	0	295	34	17	15	32	1.91
1057126--1057157	3	10.7	3	100	0	64	0	0	68	31	0.90
1057847--1057890	17	2.7	16	79	6	52	43	13	4	38	1.65
1063983--1064050	31	2.2	32	81	7	77	64	1	19	14	1.36
1081496--1081536	18	2.3	18	91	8	66	58	0	0	41	0.98
1086862--1086910	23	2.1	23	84	0	62	63	12	4	20	1.45
1089184--1089213	4	7.5	4	100	0	60	23	0	50	26	1.50
1093215--1093247	3	11.0	3	100	0	66	33	0	0	66	0.92
1111427--1111620	97	2.0	97	84	4	257	39	13	16	30	1.88
1111858--1111934	29	2.7	29	84	6	102	35	5	23	36	1.77
1111858--1111991	29	4.6	30	73	17	95	34	5	25	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111975--1112115	29	4.8	29	66	15	74	41	1	26	31	1.65
1111858--1112312	58	7.8	57	73	15	283	36	2	25	35	1.71
1112018--1112312	29	10.2	29	73	13	211	36	2	24	36	1.67
1112299--1112394	30	3.2	29	75	7	86	47	6	12	33	1.66
1113342--1113388	16	3.0	16	80	20	55	31	0	2	65	1.04
1114076--1114150	18	4.3	17	78	11	80	62	2	0	34	1.09
1114244--1114281	20	1.9	20	84	10	51	44	2	5	47	1.39
1114726--1114849	22	5.7	22	82	5	144	7	6	20	66	1.39
1114726--1114849	43	2.9	44	80	3	153	7	6	20	66	1.39
1114813--1114887	22	3.3	22	81	5	78	9	2	20	68	1.30
1114832--1114891	12	5.2	12	80	6	70	8	1	21	68	1.25
1114851--1114905	20	2.5	21	82	14	67	7	0	23	69	1.14
1116225--1116302	29	2.7	30	80	7	83	38	6	2	52	1.41
1126462--1126751	155	1.9	155	87	5	426	31	13	16	38	1.87
1128817--1128860	23	1.9	23	86	9	63	31	0	0	68	0.90
1129650--1129690	2	20.5	2	100	0	82	0	48	0	51	1.00
1129777--1129816	12	3.3	12	96	0	71	17	27	12	42	1.85
1134330--1134378	18	2.7	19	81	15	59	67	6	6	20	1.35
1134582--1134613	16	2.0	16	100	0	64	50	12	6	31	1.65
1139365--1139403	6	6.5	6	100	0	78	48	35	0	15	1.45
1145380--1145411	14	2.3	14	94	0	55	46	0	0	53	1.00
1145439--1145547	54	2.0	54	100	0	218	38	11	9	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1163629--1163688	32	1.9	32	89	3	95	48	0	11	40	1.40
1172456--1172530	34	2.1	38	87	9	113	40	0	8	52	1.31
1189335--1189368	8	4.1	8	85	7	50	70	2	2	23	1.15

Tables:   1   2   3

The End!