genome.fa.s15270.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015270.1 Kokia drynarioides strain JFW-HI SEQ_130315, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1190338

Tables:   1   2   3   

This is table  2  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390174--390230	26	2.2	27	84	12	75	56	0	1	42	1.10
390175--390215	20	2.0	21	86	13	59	56	0	0	43	0.99
391247--391282	19	1.9	18	88	5	54	47	0	0	52	1.00
391246--391302	29	1.9	30	86	10	82	43	0	0	56	0.99
391245--391300	11	5.5	10	74	19	53	41	0	0	58	0.98
398371--398405	17	2.1	17	100	0	70	48	5	28	17	1.69
406345--406408	6	10.7	6	94	0	101	0	45	17	37	1.48
410355--410389	6	5.8	6	96	0	61	0	17	48	34	1.47
414289--414584	121	2.4	121	90	0	475	42	14	11	31	1.81
426068--426105	18	2.1	19	85	14	53	47	7	23	21	1.77
431963--431996	17	1.9	18	94	5	61	41	26	2	29	1.70
435172--435205	17	2.0	17	88	0	50	64	5	2	26	1.30
439859--439919	23	2.8	21	77	18	54	45	0	4	49	1.23
442810--442903	39	2.2	43	85	10	124	29	31	1	37	1.65
444220--444269	23	2.2	23	82	10	59	32	0	10	58	1.31
468064--468104	18	2.3	18	87	8	57	46	0	0	53	1.00
468232--468282	15	3.5	15	78	5	59	58	1	1	37	1.20
474317--474594	139	2.0	139	97	0	520	46	17	15	20	1.85
479269--479298	16	1.9	16	93	6	53	66	0	6	26	1.16
481228--481259	14	2.3	14	100	0	64	31	0	0	68	0.90
481307--481348	18	2.2	20	83	12	52	66	0	0	33	0.92
491496--491539	14	2.8	16	80	16	56	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498576--498729	34	4.5	34	82	1	202	31	11	12	44	1.78
498576--498729	68	2.3	68	89	0	227	31	11	12	44	1.78
499852--499886	18	1.9	18	94	0	61	71	8	5	14	1.29
500814--500865	27	1.9	27	96	0	95	53	9	5	30	1.57
501827--501860	15	2.3	15	94	0	59	17	0	8	73	1.08
502880--502922	22	2.0	22	86	9	61	37	2	9	51	1.47
508394--508419	7	3.7	7	100	0	52	0	11	0	88	0.52
511258--511317	26	2.1	27	85	11	77	35	8	1	55	1.40
513128--513257	65	2.0	65	100	0	260	29	7	15	47	1.73
514783--515100	109	2.8	109	83	7	363	21	12	20	45	1.83
517780--517810	3	10.3	3	100	0	62	67	0	0	32	0.91
521329--521372	11	3.9	11	85	8	54	4	4	11	79	1.02
529822--529866	22	2.0	22	87	8	65	42	13	4	40	1.64
545113--545189	24	3.2	24	98	0	145	23	12	9	54	1.66
547110--547172	24	2.6	24	87	0	90	25	14	9	50	1.72
549994--550023	3	10.0	3	92	0	51	63	3	33	0	1.11
550118--550147	7	4.3	7	100	0	60	26	0	40	33	1.57
555408--555437	2	15.0	2	92	0	51	46	0	0	53	1.00
559963--560015	27	2.0	27	82	10	65	41	11	7	39	1.69
560301--560374	40	1.9	38	86	10	107	35	9	21	33	1.86
564210--564239	8	3.8	8	100	0	60	63	0	0	36	0.95
567448--567618	89	1.9	89	92	0	288	44	9	15	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571032--571062	13	2.5	13	94	5	55	45	0	6	48	1.28
572436--572704	143	1.9	143	83	6	348	33	7	13	46	1.70
579754--579790	19	1.9	19	100	0	74	32	32	13	21	1.92
583022--583049	2	14.0	2	100	0	56	50	0	0	50	1.00
589056--589080	4	6.2	4	100	0	50	76	0	0	24	0.80
592260--592293	14	2.3	15	90	5	52	79	2	0	17	0.86
592795--592835	18	2.2	18	87	12	57	21	2	9	65	1.34
594824--594861	2	19.0	2	100	0	76	50	0	0	50	1.00
595739--595821	43	1.9	43	100	0	166	45	9	18	26	1.80
595747--595837	43	2.1	43	83	4	112	46	14	15	24	1.83
596218--596266	23	2.2	21	82	13	55	53	2	0	44	1.12
598797--598862	29	2.2	31	83	5	82	43	0	3	53	1.16
600268--600299	6	5.3	6	100	0	64	31	0	34	34	1.58
600889--600916	7	4.0	7	100	0	56	28	14	14	42	1.84
605006--605072	29	2.3	29	80	10	75	35	8	4	50	1.54
607505--607547	22	2.0	22	81	9	52	44	4	0	51	1.22
627246--627286	20	2.1	19	86	4	55	0	14	4	80	0.87
629703--629756	29	1.9	28	85	7	74	40	0	0	59	0.98
644889--644916	3	9.3	3	100	0	56	0	32	0	67	0.91
657582--657609	2	14.0	2	100	0	56	50	0	0	50	1.00
663989--664044	29	1.9	29	85	0	76	32	19	14	33	1.92
682059--682115	30	1.9	30	96	0	105	50	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700992--701016	9	2.8	9	100	0	50	92	0	8	0	0.40
717758--717821	31	2.1	30	85	5	85	39	1	9	50	1.44
718982--719006	2	12.5	2	100	0	50	52	0	0	48	1.00
721559--721592	2	17.0	2	100	0	68	50	0	0	50	1.00
723822--723953	65	2.0	65	97	0	246	31	18	8	41	1.80
730995--731037	18	2.5	17	80	3	50	27	20	13	37	1.91
741248--741418	39	4.4	40	80	10	115	24	19	20	35	1.95
741283--741493	117	1.8	116	83	6	282	23	17	20	38	1.93
741287--741493	39	5.3	39	85	3	249	23	17	20	39	1.92
754054--754105	2	26.5	2	88	3	70	50	0	5	44	1.26
755796--755833	4	9.5	4	100	0	76	0	23	0	76	0.79
757383--757473	43	2.1	44	97	2	175	27	15	15	41	1.87
766191--766230	2	20.5	2	94	5	73	50	0	0	50	1.00
767510--767556	23	2.0	22	84	15	60	36	0	4	59	1.17
769287--769346	31	2.0	30	86	3	84	70	5	3	21	1.22
770189--770268	30	2.6	31	76	5	83	37	18	21	22	1.94
778109--778311	101	2.0	101	98	0	388	31	11	22	33	1.90
778826--778860	14	2.3	16	90	9	56	51	0	5	42	1.25
778851--778921	29	2.4	28	78	19	74	57	2	8	30	1.43
779822--779852	3	10.7	3	93	6	55	0	35	0	64	0.94
780746--780782	19	1.9	19	88	0	56	16	5	24	54	1.63
784990--785065	33	2.3	33	88	0	107	36	10	27	25	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787520--787545	9	2.9	9	100	0	52	88	0	0	11	0.52
797853--797896	23	2.0	23	90	4	72	43	2	0	54	1.12
801569--801612	21	2.1	21	100	0	88	38	9	13	38	1.77
802418--802593	25	7.5	22	72	18	106	12	24	19	43	1.86
802480--802593	23	5.0	23	75	17	96	13	21	20	44	1.85
802456--802593	71	2.0	69	95	2	249	11	23	21	43	1.85
803244--803278	19	1.9	19	88	11	56	31	5	0	62	1.18
803649--803716	29	2.4	28	80	9	75	35	7	1	55	1.37
803788--803828	17	2.3	18	87	8	57	58	0	0	41	0.98
804358--804489	68	2.0	68	86	1	185	37	15	6	40	1.75
804651--804685	16	2.1	17	89	10	54	45	0	0	54	0.99
806866--806910	12	3.8	12	85	2	56	75	15	0	8	1.03
807579--807661	35	2.3	36	74	14	82	34	8	2	54	1.44
809708--809742	17	2.1	17	100	0	70	31	0	0	68	0.90
810656--810695	21	2.0	21	85	5	55	65	5	0	30	1.14
812159--812209	22	2.4	22	74	9	52	37	3	0	58	1.16
817161--817196	14	2.8	12	88	12	54	25	0	2	72	0.98
821421--821463	18	2.5	17	77	7	50	32	0	2	65	1.06
827855--827914	30	2.1	28	81	12	68	55	6	6	31	1.52
827855--827920	31	2.2	30	82	12	75	54	6	6	33	1.50
828829--829445	205	3.0	205	87	2	889	26	13	18	41	1.88
834765--834797	15	2.1	16	88	5	50	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845132--845160	14	2.0	15	93	6	51	62	0	0	37	0.96
849940--849965	3	8.7	3	100	0	52	69	0	0	30	0.89
851050--851116	27	2.4	26	76	16	64	50	5	0	43	1.26
851718--851759	18	2.4	18	92	4	68	57	2	4	35	1.33
853866--854330	78	6.0	78	96	0	822	35	18	9	36	1.83
860617--860664	23	2.0	24	88	4	71	66	14	0	18	1.25
866632--866686	27	2.0	28	89	3	85	47	5	1	45	1.36
871868--871954	31	2.8	30	80	14	90	40	13	3	42	1.61
871779--871969	93	2.0	94	80	7	210	38	15	5	40	1.70
880962--881058	31	3.2	30	75	10	97	29	16	9	44	1.79

Tables:   1   2   3