genome.fa.s15272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015272.1 Kokia drynarioides strain JFW-HI SEQ_130317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  880760

Tables:   1   2   3   

This is table  1  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2328--2845	256	2.0	256	92	0	865	34	13	14	37	1.86
9183--9241	31	1.9	31	100	0	118	27	11	6	54	1.62
49304--49330	3	9.0	3	100	0	54	66	0	0	33	0.92
51749--51802	27	2.0	26	82	3	63	44	3	1	50	1.30
56682--56740	31	1.9	31	85	0	82	50	6	0	42	1.28
59554--59591	3	12.7	3	100	0	76	65	0	0	34	0.93
60040--60174	60	2.3	60	84	3	175	37	10	15	37	1.82
62838--62892	29	2.0	27	89	7	83	32	3	0	63	1.12
63189--63216	8	3.5	8	100	0	56	25	28	0	46	1.53
75657--75735	31	2.6	30	70	21	74	40	11	3	44	1.58
78901--78945	21	2.3	18	75	17	54	68	2	0	28	1.01
96439--96846	135	3.0	135	99	0	807	29	16	16	37	1.91
102645--102677	16	2.1	16	100	0	66	39	30	18	12	1.87
105229--105351	58	2.1	59	80	8	137	27	8	14	49	1.71
105867--105894	14	2.0	14	100	0	56	35	21	21	21	1.96
113243--113370	23	5.6	21	75	15	80	46	20	20	12	1.82
113289--113414	23	5.4	23	83	9	123	46	22	21	10	1.81
113264--113414	48	3.2	45	75	16	137	45	20	22	11	1.84
113290--113414	46	2.7	47	81	8	148	45	22	21	10	1.82
113242--113394	69	2.2	69	83	9	186	46	20	20	12	1.83
116440--116528	29	3.2	29	71	20	98	55	6	7	30	1.55
116420--116559	55	2.5	57	90	6	232	51	7	8	32	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136064--136143	26	3.0	26	76	12	81	30	23	15	31	1.95
138242--138279	19	2.0	20	89	5	60	28	2	2	65	1.19
138233--138294	10	6.2	10	76	16	58	27	1	3	67	1.15
138233--138304	29	2.5	28	78	12	83	27	1	2	68	1.12
139723--139760	2	19.0	2	100	0	76	50	0	0	50	1.00
147955--148008	20	2.6	20	80	16	65	35	0	37	27	1.57
150606--150647	13	3.2	13	86	6	59	52	11	4	30	1.59
152274--152324	26	2.0	25	81	11	59	43	9	3	43	1.56
153046--153087	16	2.6	16	81	7	50	66	4	9	19	1.38
153753--153821	21	3.2	21	72	10	68	36	5	1	56	1.32
153703--153886	95	2.0	93	86	8	257	41	8	3	46	1.51
153877--153921	19	2.2	20	84	7	56	46	6	2	44	1.42
153876--153924	20	2.4	22	76	16	59	44	6	2	46	1.39
157565--157604	21	2.0	21	90	5	64	77	10	5	7	1.11
165548--165584	18	2.1	18	89	0	56	48	0	27	24	1.51
169125--169159	15	2.2	16	90	10	54	0	28	0	71	0.86
169742--169795	17	3.1	17	81	5	54	59	11	11	18	1.60
169742--169795	18	3.1	18	83	2	65	59	11	11	18	1.60
180417--180470	17	3.1	17	86	2	63	18	12	11	57	1.64
190450--190517	18	3.8	18	74	3	66	16	20	14	48	1.81
193767--193826	24	2.5	24	91	0	93	36	18	15	30	1.91
194382--194451	25	2.8	25	97	0	131	30	27	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194382--194463	25	3.5	23	90	6	105	29	26	18	25	1.98
198722--198775	21	2.6	21	76	5	65	33	25	12	27	1.93
202681--202874	36	5.4	36	84	1	255	31	10	23	35	1.88
203298--203598	59	5.1	59	88	0	406	37	4	18	39	1.71
203409--203509	10	9.2	10	72	16	60	36	1	19	41	1.63
203390--203495	33	3.4	34	71	23	124	37	1	19	40	1.63
203423--203498	24	3.1	24	75	19	68	36	2	21	39	1.67
203418--203487	26	2.8	23	76	18	61	37	1	20	41	1.61
207726--207779	3	18.7	3	80	14	51	72	1	25	0	0.95
207728--207779	14	3.6	15	82	10	63	73	1	25	0	0.94
208706--208765	31	1.9	31	90	6	95	23	25	0	51	1.48
208884--208949	36	1.9	34	85	11	91	36	6	1	56	1.34
214209--214287	41	1.9	42	84	2	106	40	16	16	26	1.89
214851--214914	31	2.0	31	81	6	74	56	6	7	29	1.52
235794--235832	19	2.1	19	100	0	78	43	15	20	20	1.88
246883--246916	15	2.3	15	89	0	50	8	8	5	76	1.15
256343--256565	111	2.0	111	96	0	410	33	13	17	36	1.88
259871--259956	28	3.1	28	94	0	145	32	17	29	20	1.96
262055--262123	11	6.6	11	71	24	60	47	1	0	50	1.09
262053--262098	20	2.4	20	82	17	62	47	0	0	52	1.00
262055--262117	31	2.0	33	90	6	103	50	0	0	49	1.00
262085--262123	20	2.0	20	89	0	60	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
268702--268757	28	2.0	28	92	0	94	30	16	30	23	1.96
270557--270606	20	2.5	20	80	9	57	36	16	2	46	1.58
272826--273014	52	3.7	52	84	2	229	35	25	13	25	1.92
280095--280127	16	2.0	17	88	5	50	3	12	9	75	1.14
282840--282895	28	2.0	28	89	0	85	44	1	19	33	1.61
282843--282902	28	2.1	28	81	0	66	51	1	15	31	1.53
293349--293375	2	13.5	2	100	0	54	0	48	0	51	1.00
298659--298847	27	6.7	29	71	10	115	27	21	7	42	1.80
298712--298955	56	4.3	57	80	5	174	27	21	8	42	1.81
298797--298949	28	5.5	28	75	9	150	25	21	7	45	1.79
298709--298955	112	2.2	111	81	7	275	27	21	8	42	1.82
299157--299194	18	2.1	19	85	9	53	50	7	0	42	1.31
299459--299497	21	1.9	21	89	5	62	46	23	0	30	1.53
302026--302165	36	3.9	36	85	5	185	37	17	23	21	1.93
302828--302901	21	3.6	21	87	1	87	28	12	28	31	1.93
304347--304385	18	2.2	18	85	0	51	38	0	17	43	1.50
304962--305031	24	2.9	24	86	0	86	40	15	22	21	1.91
306969--307018	17	3.0	17	88	2	75	40	2	2	56	1.22
308728--309212	29	16.7	29	76	11	399	34	25	4	34	1.77
308729--309212	88	5.5	87	80	10	460	34	26	4	34	1.77
311361--311422	30	2.1	30	96	0	115	32	12	8	46	1.71
318817--318850	18	1.9	18	88	5	52	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320380--320446	35	1.9	34	82	8	82	64	5	0	29	1.17
320642--320674	17	2.0	17	88	5	50	75	6	0	18	1.00
324809--324914	53	2.0	53	98	0	203	40	7	27	24	1.82
324965--325006	21	2.0	21	100	0	84	23	9	23	42	1.83
342531--342555	7	3.6	7	100	0	50	88	0	0	12	0.53
357988--358084	32	3.1	32	62	14	85	35	4	20	40	1.72
357960--358084	61	2.1	60	96	1	232	39	4	19	37	1.70
361327--361357	10	3.2	10	95	4	55	0	29	0	70	0.87
367658--367955	69	4.3	71	78	5	225	32	22	22	22	1.98
367801--368082	69	4.1	69	78	4	273	33	25	21	19	1.97
367690--368052	138	2.6	137	80	6	374	33	23	21	22	1.98
373490--373554	17	3.8	17	81	0	67	49	13	20	16	1.80
375813--375863	24	2.1	24	82	13	61	54	7	11	25	1.63
378816--378853	2	19.5	2	89	5	60	50	2	0	47	1.15
379922--379978	18	3.2	18	80	7	62	0	31	0	68	0.90
395512--395584	34	2.1	34	80	9	78	24	24	24	26	2.00
395383--395586	108	1.9	108	89	0	318	22	21	23	32	1.98
400729--400753	9	2.8	9	100	0	50	68	0	0	32	0.90
402623--402671	13	4.1	13	84	10	61	63	0	0	36	0.95
402630--402693	26	2.5	26	78	9	62	64	3	0	32	1.10
402641--402749	57	1.9	55	81	7	130	57	7	0	33	1.32
403137--403195	28	2.1	27	81	9	66	32	6	10	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403145--403208	28	2.3	28	83	5	76	34	9	9	46	1.68
403155--403225	28	2.5	28	77	8	72	38	7	7	47	1.58
405350--405424	24	3.1	24	79	9	89	26	21	22	29	1.99
410714--410945	116	2.0	116	92	1	385	22	12	21	43	1.85
411392--411456	24	2.8	24	71	2	60	43	6	3	47	1.43
416667--416786	55	2.2	55	89	0	177	26	16	24	32	1.96
416666--416767	28	3.7	28	67	12	75	25	17	25	31	1.97
417842--417880	20	1.9	20	84	5	51	5	2	28	64	1.28
419298--419341	19	2.2	20	84	4	54	47	6	9	36	1.62
425469--425565	30	3.3	29	82	5	97	36	6	21	36	1.79

Tables:   1   2   3