genome.fa.s15272.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015272.1 Kokia drynarioides strain JFW-HI SEQ_130317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  880760

Tables:   1   2   3   

This is table  3  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675704--676081	122	3.2	122	85	6	556	45	1	7	45	1.41
675866--676024	30	5.5	30	65	28	103	48	1	4	45	1.30
676062--676223	34	4.4	34	75	20	141	40	0	11	47	1.40
676108--676218	33	3.3	34	87	7	156	40	0	12	46	1.42
676221--676246	8	3.2	8	100	0	52	61	0	0	38	0.96
676062--676274	113	1.9	113	84	5	288	41	0	10	47	1.38
679132--679201	35	2.0	36	88	2	106	18	21	14	45	1.84
680596--680684	29	3.0	29	74	11	81	33	13	13	39	1.84
680840--680907	31	2.3	30	82	5	84	45	11	10	32	1.74
681829--681892	23	2.8	22	81	9	65	75	3	4	17	1.11
689492--689688	60	3.3	59	80	9	215	43	3	21	31	1.68
689487--689732	30	8.3	29	76	13	191	40	3	23	32	1.71
689541--689688	59	2.5	60	83	7	196	41	4	22	31	1.72
690847--691650	77	10.4	77	83	5	946	26	18	22	32	1.97
690847--691638	154	5.1	154	88	2	1110	26	18	22	33	1.97
690847--691650	309	2.6	308	89	2	1177	26	18	22	32	1.97
690847--691655	232	3.5	231	84	2	1034	26	18	22	33	1.97
703365--703700	30	11.2	29	72	13	175	44	3	19	31	1.69
703383--703669	60	4.8	58	76	12	228	45	3	20	30	1.69
703487--703668	90	2.0	89	82	9	219	46	4	20	28	1.70
705525--705577	13	4.1	13	85	0	61	35	1	20	41	1.64
705535--705588	26	2.0	27	89	3	83	42	3	16	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705541--705589	13	3.8	13	78	10	55	42	4	16	36	1.67
705528--705589	26	2.4	26	81	10	81	38	3	19	38	1.68
707490--707520	2	16.0	2	93	6	55	51	0	0	48	1.00
712591--712633	17	2.5	17	100	0	86	18	27	39	13	1.89
714531--714567	16	2.3	17	86	9	51	16	10	10	62	1.55
714902--714974	38	1.9	38	100	0	146	43	27	6	21	1.78
716287--716465	81	2.2	80	86	4	243	37	3	15	43	1.66
716929--716967	6	6.5	6	100	0	78	51	0	15	33	1.44
718235--718278	22	2.0	22	95	0	79	40	0	20	38	1.53
720101--720131	14	2.2	14	94	0	53	25	6	6	61	1.45
742353--742483	65	2.0	65	96	0	244	28	6	29	35	1.83
745189--745226	13	2.7	15	88	8	53	50	10	2	36	1.51
745906--745936	12	2.5	12	94	5	53	45	16	6	32	1.72
750466--750523	28	2.0	29	81	15	68	51	8	3	36	1.49
761384--761413	7	4.1	7	95	4	51	83	0	0	16	0.65
761452--761533	11	7.6	10	75	8	56	67	3	3	25	1.24
763075--763519	50	9.0	49	72	5	216	22	25	17	34	1.95
763075--763510	100	4.4	98	75	5	286	22	25	17	35	1.95
763187--763397	98	2.1	98	83	3	253	21	24	16	37	1.93
778123--778164	19	2.2	19	87	8	59	66	2	0	30	1.04
794291--794321	3	10.3	3	100	0	62	35	0	32	32	1.58
798469--798493	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800798--800841	22	1.9	24	81	9	56	43	0	9	47	1.35
805263--805298	18	1.9	19	88	5	56	63	13	5	16	1.47
823230--823383	81	1.9	81	90	0	245	28	20	25	25	1.99
828830--828861	15	2.2	14	94	5	55	18	28	9	43	1.81
832580--832635	28	2.0	28	100	0	112	42	14	14	28	1.84
833525--833582	26	2.3	26	84	3	73	24	3	1	70	1.12
833525--833579	25	2.2	25	83	3	67	23	3	1	70	1.12
841259--841396	28	5.0	28	82	8	165	23	14	23	38	1.92
841259--841380	55	2.2	56	85	8	160	23	14	22	38	1.92
860254--860340	28	3.2	26	77	9	75	22	16	21	39	1.92
861406--861460	24	2.3	24	87	0	83	23	14	9	52	1.70
861414--861468	24	2.3	24	83	0	65	25	18	9	47	1.78
867953--868002	2	25.0	2	100	0	100	50	0	0	50	1.00
870847--870878	6	5.3	6	100	0	64	50	0	18	31	1.48
871296--871411	59	2.0	59	93	3	198	53	1	0	44	1.10
871304--871411	10	10.6	10	68	16	53	54	1	0	43	1.11
871322--871386	26	2.5	26	78	9	71	55	1	0	43	1.09
871412--871466	28	2.0	27	92	3	92	38	0	1	60	1.08
874009--874074	23	2.8	23	88	2	87	54	1	28	15	1.50
875223--875265	18	2.4	18	88	7	61	46	0	0	53	1.00
875391--875456	22	3.0	22	82	10	82	66	1	4	27	1.20
878165--878290	62	2.0	62	92	0	207	34	19	14	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878334--878407	37	2.0	37	86	2	105	39	21	28	10	1.87
878647--878794	20	7.8	20	68	24	88	5	1	18	75	1.07
878632--878756	44	3.0	41	80	10	130	6	0	18	74	1.08
878686--878815	9	14.2	9	70	24	60	8	1	15	74	1.12
878664--878794	35	3.8	33	81	11	140	5	0	18	75	1.03
878634--878745	15	7.5	15	65	16	54	6	0	19	73	1.10
878723--878761	11	3.5	11	85	3	51	2	0	12	84	0.72
878663--878792	12	11.2	12	70	13	94	5	0	19	74	1.05
878945--878969	10	2.5	10	100	0	50	16	0	8	76	1.02

Tables:   1   2   3

The End!