genome.fa.s15272.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015272.1 Kokia drynarioides strain JFW-HI SEQ_130317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  880760

Tables:   1   2   3   

This is table  2  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427881--427920	21	1.9	22	85	10	57	32	17	27	22	1.96
442254--442349	19	5.3	19	65	16	53	66	3	2	28	1.18
442922--442997	30	2.5	30	83	8	84	27	6	5	60	1.43
442994--443023	15	2.0	15	93	0	51	20	3	0	76	0.92
442981--443012	14	2.4	14	90	10	50	18	3	3	75	1.08
443475--443540	32	2.1	32	88	0	96	48	3	0	48	1.17
448347--448454	57	1.9	57	92	0	180	45	6	21	26	1.76
448330--448444	29	4.0	29	75	4	108	45	5	20	29	1.72
448873--449021	28	5.2	28	72	12	97	45	8	21	24	1.80
448844--449025	57	3.2	56	82	3	204	43	8	21	26	1.80
447959--448946	494	2.0	493	92	2	1651	36	9	21	33	1.85
448824--449025	29	7.1	29	74	8	146	43	7	20	27	1.80
448891--449024	28	4.7	28	77	2	142	44	8	23	24	1.80
453498--453535	9	4.3	9	86	3	51	21	0	5	73	1.02
453496--453539	22	2.0	22	86	8	63	20	0	4	75	0.98
456061--456338	41	6.8	40	82	4	313	27	24	10	37	1.88
456056--456341	82	3.5	82	88	1	394	27	24	10	37	1.88
456042--456341	123	2.4	125	85	2	381	27	24	10	38	1.87
458491--458546	26	2.2	25	96	3	103	44	8	17	28	1.79
461178--461211	16	2.0	18	88	11	54	64	2	20	11	1.39
462502--462585	17	4.9	17	79	2	89	36	1	4	57	1.28
462502--462585	34	2.5	35	86	7	104	36	1	4	57	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464444--464544	30	3.4	29	76	11	89	33	18	2	44	1.65
464444--464818	29	12.8	29	72	14	119	36	25	2	36	1.69
464442--464661	59	3.7	58	76	7	185	35	24	2	37	1.68
464498--464786	88	3.3	87	80	7	237	37	25	2	34	1.68
464655--464816	59	2.7	59	86	1	218	38	24	2	33	1.69
464566--464815	88	2.9	87	80	7	240	38	26	2	34	1.68
467093--467205	56	2.0	56	94	0	199	38	12	26	22	1.89
477145--477312	86	2.0	85	85	1	228	36	19	22	22	1.95
476994--477861	210	4.1	210	89	0	1236	36	19	22	21	1.95
477400--477471	37	1.9	37	94	0	126	33	18	25	23	1.97
478248--478347	17	5.9	17	86	0	137	37	1	4	58	1.24
478249--478351	11	9.2	11	70	13	59	37	0	3	57	1.24
478249--478347	6	17.3	6	73	10	64	37	1	4	57	1.24
484039--484099	26	2.4	26	81	10	65	55	0	0	44	0.99
487387--487483	49	2.0	49	97	0	185	31	9	21	37	1.85
499962--500062	41	2.5	41	90	0	166	39	10	22	26	1.87
500080--500176	40	2.4	40	89	0	149	43	9	23	23	1.83
501214--501627	206	2.0	208	96	1	769	38	15	10	35	1.82
505769--505807	20	1.9	20	84	5	51	30	5	10	53	1.56
510719--510765	21	2.2	21	84	0	58	31	23	14	29	1.95
511555--511916	193	1.9	195	84	2	487	28	26	17	27	1.97
514431--514587	30	5.3	30	77	6	158	34	6	22	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514434--514604	60	2.9	61	78	7	188	36	6	19	37	1.78
514443--514655	30	7.2	29	75	11	130	36	7	19	37	1.79
514562--514635	28	2.6	29	91	4	114	36	6	16	40	1.75
515857--515888	8	3.8	9	84	16	50	21	0	0	78	0.76
516486--516650	50	3.3	51	83	8	189	22	22	17	37	1.94
516559--516663	50	2.1	50	85	0	138	26	21	17	34	1.95
520218--520374	78	2.0	78	96	0	287	24	22	17	35	1.96
531462--531499	17	2.2	17	86	9	51	55	15	10	18	1.68
546245--546277	16	2.1	16	100	0	66	69	6	12	12	1.35
546326--546510	30	6.3	29	78	9	178	35	4	22	37	1.76
546326--546510	60	3.1	59	80	9	216	35	4	22	37	1.76
546457--546540	28	2.9	28	84	8	89	36	5	20	36	1.77
546475--546550	28	2.7	28	80	10	77	39	5	17	38	1.72
546488--546549	30	2.2	28	85	8	81	37	4	16	41	1.69
550674--550721	23	2.1	23	92	0	78	50	8	25	16	1.73
551976--552001	2	13.0	2	100	0	52	50	0	0	50	1.00
569099--569135	18	2.1	18	94	0	65	40	13	0	45	1.43
569101--569140	18	2.2	18	86	4	53	45	15	0	40	1.46
570649--570684	3	12.0	3	93	0	63	33	2	0	63	1.08
570919--571134	109	2.0	110	92	0	362	32	12	15	40	1.84
575214--575281	5	13.0	5	77	20	52	83	0	14	1	0.71
575214--575290	23	3.3	23	89	7	102	83	0	14	2	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575215--575292	14	5.9	13	80	16	90	83	0	14	2	0.75
575215--575292	6	13.0	6	81	16	83	83	0	14	2	0.75
578396--579012	49	12.6	49	81	1	585	37	14	25	22	1.92
578444--578969	246	2.1	245	82	1	651	38	13	24	22	1.91
580560--580601	3	14.0	3	90	9	68	33	2	0	64	1.07
580906--581126	109	2.0	111	86	3	313	33	13	12	40	1.82
590940--590981	19	2.3	18	84	12	50	40	14	4	40	1.67
591270--591318	19	2.6	18	81	12	53	10	14	10	65	1.47
591310--591362	20	2.6	20	87	3	70	15	18	15	50	1.77
591413--591462	20	2.5	20	83	3	64	28	12	10	50	1.71
593045--593101	28	2.0	28	100	0	114	26	14	28	31	1.94
594158--594201	2	22.0	2	95	0	79	50	2	0	47	1.13
598658--598717	11	5.6	11	74	7	52	35	3	21	40	1.70
601264--601327	29	2.2	30	82	2	76	39	18	12	29	1.88
602133--602210	29	2.7	29	80	9	95	41	20	10	28	1.85
604977--605085	40	2.7	39	77	4	128	25	23	17	33	1.96
605062--605222	41	3.9	41	77	3	162	26	22	17	32	1.96
609109--609144	18	1.9	19	88	5	56	41	22	25	11	1.86
610622--610680	17	3.5	17	76	0	55	20	16	13	49	1.80
615440--615673	117	2.0	117	95	0	423	28	21	15	33	1.95
617971--618008	19	2.0	19	94	0	67	44	26	7	21	1.79
629605--629708	53	2.0	53	94	0	181	27	20	11	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631959--632056	39	2.5	40	86	3	144	30	19	21	28	1.97
635769--636194	59	7.2	59	75	10	291	36	2	25	36	1.68
635769--636197	30	14.5	29	74	13	231	36	2	25	36	1.68
635767--636197	118	3.6	119	79	8	452	36	2	25	36	1.68
640045--640143	39	2.5	40	91	3	164	30	18	21	30	1.97
643321--643366	18	2.6	17	80	6	56	71	0	2	26	0.97
643597--643653	30	1.9	30	89	7	89	47	0	1	50	1.11
643812--643870	20	3.0	20	74	18	59	33	11	1	52	1.48
644234--644277	16	2.8	16	82	6	54	70	2	2	25	1.10
645458--645552	30	3.1	30	85	8	129	40	25	3	31	1.71
657240--657367	50	2.6	50	83	0	166	38	18	24	18	1.93
657225--657388	50	3.3	50	75	7	154	37	20	21	20	1.94
657424--657674	40	6.3	40	83	2	274	34	25	15	24	1.94
657424--657674	80	3.2	80	85	2	310	34	25	15	24	1.94
657424--657674	120	2.1	120	83	5	312	34	25	15	24	1.94
657663--657848	50	3.7	50	86	3	266	39	17	18	23	1.92
659550--659697	30	4.9	29	84	7	170	41	21	4	32	1.72
659555--659697	60	2.4	59	87	5	198	42	20	3	33	1.69
661033--661087	20	2.7	21	77	11	69	63	9	10	16	1.51
661033--661106	20	3.7	21	72	15	66	62	12	10	14	1.55
661129--661174	19	2.3	20	77	7	58	52	10	19	17	1.74
661353--661381	6	4.8	6	100	0	58	17	0	51	31	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669083--669112	7	4.3	7	95	0	51	3	70	0	26	1.03
669808--669883	38	2.0	38	87	5	109	53	17	7	21	1.68
672771--673132	43	8.5	43	81	1	327	31	20	17	30	1.96
672771--673132	129	2.8	127	80	4	379	31	20	17	30	1.96
672852--673178	43	7.6	43	76	7	163	30	21	18	29	1.97
672798--673175	86	4.4	87	77	3	329	30	21	17	30	1.96
672803--673175	129	2.9	129	74	8	339	31	21	17	29	1.96
673192--673288	43	2.3	43	83	3	115	26	24	13	35	1.93
675683--676117	114	3.8	114	87	5	622	43	1	8	46	1.42
675829--675854	8	3.2	8	100	0	52	46	0	0	53	1.00

Tables:   1   2   3