genome.fa.s15281.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015281.1 Kokia drynarioides strain JFW-HI SEQ_130326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648972

Tables:   1   2   3   

This is table  1  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194--228	15	2.3	15	85	0	52	71	2	2	22	1.13
6855--6880	7	3.7	7	100	0	52	11	0	0	88	0.52
11468--11513	24	1.9	23	86	8	65	56	6	4	32	1.45
15608--15640	17	2.0	17	88	5	50	9	33	0	57	1.30
17840--17874	17	2.1	17	100	0	70	34	5	20	40	1.76
19297--19326	10	3.0	10	100	0	60	80	0	0	20	0.72
26067--26122	25	2.3	25	87	3	78	62	1	3	32	1.23
26376--26473	29	3.4	27	81	14	99	55	3	6	35	1.40
26399--26484	29	3.0	29	83	10	88	56	2	4	36	1.33
26461--26486	11	2.4	11	100	0	52	65	0	0	34	0.93
26423--26488	20	3.3	19	72	16	53	57	1	4	36	1.28
26476--26522	17	2.8	17	75	12	60	59	2	8	29	1.39
28184--28224	17	2.3	19	87	8	59	58	2	2	36	1.24
38458--38482	2	12.5	2	100	0	50	52	0	0	48	1.00
40286--40320	12	2.9	12	86	0	52	25	51	20	2	1.61
43624--43724	48	2.1	48	84	0	130	20	10	39	28	1.87
44078--44110	4	8.5	4	93	6	59	48	24	0	27	1.51
44382--44408	6	4.5	6	100	0	54	33	48	0	18	1.49
44411--44441	3	10.3	3	100	0	62	0	32	0	67	0.91
47010--47061	23	2.3	22	83	12	61	42	21	3	32	1.71
47378--47410	2	16.5	2	100	0	66	48	0	0	51	1.00
49680--49722	22	2.0	22	86	9	61	30	4	4	60	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53193--53217	12	2.1	12	100	0	50	68	0	0	32	0.90
54204--54252	9	5.1	9	76	13	53	32	2	4	61	1.26
56121--56316	97	2.0	98	89	4	297	37	15	17	29	1.91
56369--56409	19	2.2	19	86	8	57	48	9	14	26	1.75
56577--56685	28	3.8	28	73	12	87	33	2	26	36	1.71
56594--57004	58	7.1	57	76	6	319	34	4	26	34	1.77
56605--57009	116	3.5	117	77	8	382	35	4	26	33	1.77
56594--56986	29	13.6	29	73	11	245	35	4	26	34	1.76
58698--58756	12	5.1	12	75	8	50	52	11	1	33	1.48
58728--58773	16	2.8	17	80	6	58	56	6	0	36	1.25
59309--59360	18	3.0	18	81	10	56	46	1	0	51	1.12
61015--61042	6	4.7	6	100	0	56	85	14	0	0	0.59
64452--64510	31	1.9	31	92	0	100	45	8	6	38	1.61
64496--64571	29	2.6	27	74	13	71	40	10	9	39	1.72
65021--65072	22	2.3	23	77	12	63	36	0	1	61	1.07
67737--67784	19	2.5	20	89	3	71	45	0	8	45	1.33
67914--67967	10	5.5	10	82	4	65	27	1	5	64	1.26
67916--67980	19	3.3	19	79	10	69	32	1	4	61	1.26
67924--67980	20	2.8	20	69	12	53	31	1	3	63	1.22
68405--68574	65	2.6	65	72	0	160	25	28	15	30	1.96
68758--68840	41	2.0	41	97	0	157	34	15	14	34	1.88
71126--71190	20	3.0	20	77	18	60	67	16	3	12	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71172--71221	15	3.0	16	73	21	57	68	18	6	8	1.36
71143--71270	12	10.8	12	68	9	66	68	17	4	9	1.34
71195--71362	24	7.5	24	76	14	98	71	17	3	7	1.23
71227--71360	20	6.3	20	77	17	128	72	17	2	7	1.18
71267--71360	22	4.5	21	80	7	111	74	18	2	5	1.11
71287--71360	11	6.9	11	70	11	55	74	17	2	5	1.13
71227--71360	64	2.1	66	83	8	170	72	17	2	7	1.18
71267--71360	42	2.2	42	88	7	138	74	18	2	5	1.11
72762--72822	10	6.3	9	78	12	59	37	1	1	59	1.17
73086--73116	16	1.9	16	93	0	53	22	0	3	74	0.96
91748--91798	23	2.2	22	82	6	57	25	3	5	64	1.33
94009--94100	27	3.4	27	80	0	112	22	29	27	20	1.99
94288--94343	20	2.6	21	83	16	62	60	0	8	30	1.27
97486--97535	26	1.9	26	87	0	73	30	0	12	58	1.34
100501--100534	17	2.0	17	94	0	59	52	2	0	44	1.16
102170--102216	24	2.0	23	83	4	58	29	2	0	68	1.02
102241--102268	14	2.0	14	100	0	56	85	0	0	14	0.59
110733--110787	19	2.9	19	78	7	60	60	3	0	36	1.15
110730--110779	20	2.4	22	74	16	61	60	6	0	34	1.21
118832--118858	14	1.9	14	100	0	54	62	7	29	0	1.22
123006--123032	7	3.9	7	100	0	54	0	11	0	88	0.50
132876--132960	31	2.8	31	82	5	84	35	14	4	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138565--138735	28	6.1	28	80	5	168	48	11	12	28	1.74
138566--138738	56	3.1	56	84	1	213	48	12	12	27	1.76
138578--138735	83	1.9	82	87	6	230	49	10	12	27	1.74
140261--140294	9	3.7	9	92	4	50	79	0	17	2	0.86
140253--140294	14	3.1	14	81	18	54	78	0	16	4	0.91
140729--140762	18	1.9	17	88	5	50	50	0	17	32	1.47
153449--153538	33	2.7	33	92	0	144	20	21	15	43	1.88
158557--158601	20	2.2	20	88	0	63	37	6	15	40	1.74
159856--159882	11	2.5	11	100	0	54	0	7	0	92	0.38
167992--168031	20	2.0	20	100	0	80	65	20	10	5	1.42
170578--170624	19	2.4	20	86	10	62	36	10	0	53	1.36
170577--170623	20	2.3	21	79	20	55	36	10	0	53	1.36
174793--174840	13	3.5	14	75	13	55	60	4	2	33	1.27
175344--175426	33	2.6	32	81	11	89	21	12	14	51	1.74
178646--178687	6	7.0	6	100	0	84	16	50	0	33	1.46
180961--181375	212	2.0	213	94	2	737	29	14	17	37	1.90
190147--190218	28	2.6	28	79	12	76	59	4	5	30	1.39
190407--190461	14	3.7	15	80	9	51	34	23	3	38	1.73
190908--190969	31	2.0	32	87	9	92	46	1	0	51	1.10
190905--190973	31	2.3	29	81	13	86	49	1	0	49	1.09
196526--196553	6	4.7	6	100	0	56	64	0	0	35	0.94
198258--198292	18	1.9	18	88	11	54	71	0	2	25	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
204074--204138	6	11.2	6	74	12	64	44	0	1	53	1.09
204046--204126	34	2.3	35	87	2	119	39	0	3	56	1.17
204064--204119	12	4.9	11	75	16	51	39	0	3	57	1.16
204046--204138	17	5.4	16	77	13	89	41	0	3	54	1.16
210085--210638	49	11.3	49	74	11	413	38	18	25	17	1.93
210068--210662	98	6.1	98	85	4	709	37	18	25	18	1.93
211021--211078	17	3.4	17	80	7	73	43	0	3	53	1.17
211791--211839	9	5.1	10	80	14	50	57	2	0	40	1.10
212996--213360	29	12.4	28	75	13	281	35	23	1	40	1.63
212977--213389	58	7.0	58	80	9	394	36	23	1	38	1.63
218372--218413	21	2.0	21	81	9	50	57	11	11	19	1.65
235503--235567	24	2.8	24	86	6	89	38	21	12	27	1.89
237232--237279	11	4.4	11	79	10	53	68	29	0	2	1.01
237239--237396	12	13.8	12	71	15	93	70	21	3	3	1.19
237249--237376	32	3.9	31	76	15	116	71	19	3	4	1.19
237327--237392	25	2.7	23	79	9	60	71	21	6	1	1.16
242145--242181	18	2.0	20	89	10	60	51	13	5	29	1.63
248116--248140	12	2.1	12	100	0	50	8	32	28	32	1.86
250537--250574	20	1.9	19	94	5	67	50	0	5	44	1.24
250534--250580	20	2.5	18	81	18	60	48	0	6	44	1.28
251848--251927	41	2.0	41	89	0	124	22	21	18	37	1.94
270685--270743	26	2.3	26	85	5	77	42	6	20	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270936--270993	21	2.8	20	79	7	64	29	1	1	67	1.11
274192--274387	95	2.1	95	95	0	365	33	19	17	29	1.95
283208--283286	38	2.1	38	92	4	133	50	2	0	46	1.14
283209--283276	20	3.5	20	67	20	63	51	2	0	45	1.16
283228--283294	20	3.5	20	68	24	54	50	2	0	46	1.16
284420--284454	18	2.0	17	94	5	61	51	0	0	48	1.00
289774--289803	14	2.1	15	93	6	53	66	0	0	33	0.92
292880--292940	23	2.6	24	79	7	72	14	22	14	47	1.81
300132--300192	18	3.4	17	81	6	68	44	1	1	52	1.20
300132--300176	17	2.6	18	89	3	65	40	2	2	55	1.24

Tables:   1   2   3