genome.fa.s15281.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015281.1 Kokia drynarioides strain JFW-HI SEQ_130326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648972

Tables:   1   2   3   

This is table  2  of  3  ( 280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300147--300192	13	3.8	12	80	8	58	47	0	2	50	1.13
300147--300192	6	7.7	6	83	9	58	47	0	2	50	1.13
302023--302089	30	2.2	30	86	0	98	35	25	1	37	1.65
302052--302491	57	7.6	56	71	14	202	33	23	3	39	1.71
302049--302448	29	13.9	28	69	10	161	33	24	3	39	1.72
302150--302597	57	7.7	57	70	13	204	32	22	4	40	1.73
302895--302988	49	1.9	49	88	0	143	31	20	12	35	1.90
312892--313109	100	2.2	99	81	7	246	38	16	26	18	1.92
313098--313531	51	8.7	50	72	10	262	40	20	24	14	1.90
312995--313531	50	10.7	50	70	11	296	40	19	24	15	1.90
312897--313575	149	4.5	150	79	8	670	39	19	25	15	1.91
314804--314851	19	2.3	21	82	13	64	66	0	0	33	0.92
315832--315948	30	3.9	29	73	10	110	33	23	3	40	1.71
315846--316355	60	8.7	60	73	16	220	33	23	2	40	1.68
315876--316015	30	4.7	30	76	5	106	31	24	2	41	1.69
315876--316355	29	16.5	29	69	16	208	33	23	2	40	1.68
316054--316354	28	10.5	28	73	16	199	34	24	1	39	1.64
315876--316355	57	8.3	55	72	17	210	33	23	2	40	1.68
316079--316297	86	2.5	86	78	8	230	34	23	1	40	1.63
315977--316444	58	8.1	57	73	14	238	33	23	2	40	1.69
316427--316488	28	2.2	28	85	5	81	35	27	8	29	1.85
318494--318528	18	2.0	18	88	5	54	68	0	2	28	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318494--318536	18	2.3	19	84	8	52	69	2	2	25	1.12
318523--318579	25	2.2	25	84	3	69	75	3	5	15	1.12
319713--319758	8	6.1	8	78	14	53	52	0	0	47	1.00
319717--319769	21	2.6	20	85	5	70	52	0	0	47	1.00
319713--319770	29	2.0	30	96	3	109	50	0	0	50	1.00
319763--319798	19	1.9	18	88	5	54	41	2	0	55	1.14
319829--319937	37	3.0	36	73	18	91	47	0	4	47	1.22
319891--319939	23	2.1	23	81	11	55	42	0	8	48	1.32
320075--320123	18	2.7	17	84	15	55	44	2	4	48	1.33
320875--320927	25	2.2	24	82	3	61	66	0	3	30	1.10
323988--324118	66	2.0	66	98	0	253	39	16	14	29	1.88
328076--328124	16	3.0	17	80	14	59	53	0	0	46	1.00
331295--331442	72	2.1	72	85	5	201	27	28	18	25	1.98
332520--332582	29	2.1	30	83	13	78	47	3	0	49	1.17
334206--334232	6	4.5	6	100	0	54	14	51	14	18	1.76
336044--336093	22	2.2	24	85	7	68	62	4	2	32	1.25
336377--336425	24	2.0	24	84	7	64	67	2	0	30	1.02
337856--337927	5	14.2	5	72	18	51	19	2	4	73	1.12
337852--337923	24	2.9	24	82	17	85	19	4	4	72	1.18
338006--338034	2	14.5	2	100	0	58	48	0	0	51	1.00
348661--348725	30	2.2	30	94	0	112	23	4	15	56	1.57
349682--349711	6	5.0	6	95	0	51	80	0	20	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353341--353391	18	3.1	17	77	8	52	50	0	1	47	1.12
354396--354432	17	2.2	18	85	9	51	56	0	21	21	1.42
354383--354432	22	2.3	22	79	6	57	56	2	20	22	1.53
360989--361119	48	2.7	47	77	6	129	54	6	11	27	1.59
364485--364547	29	2.2	28	83	10	83	44	3	1	50	1.27
371726--371754	2	14.5	2	100	0	58	51	0	48	0	1.00
378632--378695	28	2.3	28	81	5	67	43	12	4	39	1.63
380969--381017	24	2.0	26	84	15	68	48	10	0	40	1.37
382425--382463	18	2.2	18	95	0	69	38	17	5	38	1.72
382433--382472	18	2.2	18	86	0	53	35	17	10	37	1.83
383371--383410	3	13.3	3	100	0	80	65	0	0	35	0.93
384757--384838	37	2.2	37	95	0	146	40	12	8	39	1.73
385539--385573	13	2.8	13	91	4	54	51	20	0	28	1.47
386043--386077	17	2.0	18	94	5	63	51	25	0	22	1.48
387555--387598	20	2.2	20	83	4	52	45	0	2	52	1.13
392752--392802	25	2.0	25	96	0	93	23	7	21	47	1.77
393459--393520	27	2.3	27	100	0	124	51	12	19	16	1.76
395681--395716	18	2.0	18	88	0	54	44	2	2	50	1.31
400868--401232	195	1.9	191	84	4	491	26	27	17	28	1.98
407186--407222	19	2.0	20	89	10	60	54	2	2	40	1.29
408347--408432	4	21.2	4	74	11	68	65	0	33	1	1.01
408348--408399	13	4.1	13	75	5	61	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408346--408432	20	4.5	19	83	9	106	64	0	34	1	1.01
415364--415405	16	2.6	17	81	11	61	66	0	0	33	0.92
431760--431805	24	2.0	22	84	16	58	58	2	10	28	1.43
433725--433767	21	2.0	21	100	0	86	32	13	25	27	1.94
451132--451188	29	2.0	29	82	0	69	43	1	8	45	1.45
456330--456359	3	10.0	3	100	0	60	66	0	0	33	0.92
456463--456487	8	3.1	8	100	0	50	36	0	0	64	0.94
456532--456583	14	3.8	14	82	5	61	50	25	0	25	1.50
456533--456589	27	2.1	27	83	6	71	50	26	0	22	1.49
457110--457144	17	2.0	17	88	5	52	60	0	0	40	0.97
457192--457217	6	4.3	6	100	0	52	15	34	0	50	1.45
465776--465807	15	2.0	17	88	11	50	21	56	21	0	1.43
465755--465808	18	2.9	18	76	13	56	18	55	22	3	1.58
466310--466351	19	2.2	20	86	4	59	35	21	0	42	1.53
466509--466544	2	18.0	2	100	0	72	50	0	0	50	1.00
468422--468699	140	2.0	138	84	5	357	50	11	12	25	1.74
468432--468733	140	2.2	136	81	5	322	50	13	10	25	1.73
477751--477781	5	6.2	5	92	0	53	0	45	19	35	1.51
479164--479192	3	9.7	3	100	0	58	31	0	68	0	0.89
483264--483308	19	2.4	19	100	0	90	48	0	4	46	1.22
488677--488868	39	4.9	39	70	10	149	27	16	27	28	1.97
488757--488883	39	3.3	38	77	4	137	29	16	29	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488757--489020	39	6.8	39	69	5	104	28	15	28	27	1.96
488676--489951	155	8.2	156	77	5	895	28	17	27	26	1.97
488911--489033	39	3.2	39	74	5	124	28	14	30	26	1.95
488676--489954	78	16.4	77	77	4	866	28	17	27	26	1.97
489261--489538	39	7.1	39	70	13	153	27	16	29	26	1.97
489413--489932	39	13.4	39	67	8	141	29	18	27	25	1.98
489970--490134	41	4.0	41	87	0	222	33	14	16	34	1.90
489970--490134	82	2.0	82	89	0	249	33	14	16	34	1.90
501892--501979	44	2.0	44	100	0	176	43	2	4	50	1.35
503524--503883	62	5.8	62	90	0	567	31	11	20	36	1.89
509497--509522	13	2.0	13	100	0	52	30	0	7	61	1.24
510143--510181	20	2.0	20	89	0	60	38	28	10	23	1.87
510198--510242	14	3.3	15	79	14	53	48	35	0	15	1.45
510208--510266	28	2.1	28	83	0	73	45	30	1	22	1.62
512401--512435	16	2.2	16	89	0	52	45	0	22	31	1.53
512650--512718	35	2.0	36	86	11	99	36	1	1	60	1.14
512960--512989	15	1.9	15	93	6	51	50	3	0	46	1.18
520059--520133	24	3.3	23	82	13	79	70	4	0	25	1.04
520075--520137	24	2.6	25	87	7	87	66	3	0	30	1.07
520172--520245	28	2.6	28	81	10	89	63	2	0	33	1.09
520145--520353	19	10.8	19	74	13	133	61	3	2	32	1.27
520248--520325	21	3.9	20	79	15	74	56	5	3	34	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520100--520354	10	26.1	10	67	14	108	61	3	2	32	1.25
520143--520353	9	22.1	9	70	15	131	61	3	2	32	1.27
520493--520521	2	14.5	2	100	0	58	51	0	0	48	1.00
520924--520961	19	2.2	17	86	13	51	31	2	0	65	1.06
520895--520956	29	2.2	29	83	8	76	27	1	3	67	1.15
521718--521761	23	1.9	23	81	9	54	38	9	18	34	1.82
532339--532456	48	2.5	48	98	0	227	39	25	17	16	1.91
533836--533883	19	2.7	18	83	6	62	75	0	2	22	0.91
535915--535939	3	8.3	3	100	0	50	32	0	36	32	1.58
544186--544234	5	9.8	5	97	0	71	53	0	40	6	1.26

Tables:   1   2   3