Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015281.1 Kokia drynarioides strain JFW-HI SEQ_130326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  648972

Tables:   1   2   3   

This is table  3  of  3  ( 280 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
546792--546863
21
3.3
21
74
14
74
9
6
16
66
1.41
546781--546863
44
1.9
43
87
2
121
9
6
18
66
1.41
546792--546857
12
5.8
12
73
10
50
9
6
18
66
1.40
547863--547945
3
28.3
3
79
9
73
0
34
0
65
0.93
552492--552546
27
2.0
27
100
0
110
45
3
10
40
1.57
552533--552620
29
3.0
29
79
14
92
44
3
13
38
1.61
553923--553957
12
2.9
12
91
0
61
40
51
8
0
1.33
560553--560580
2
14.0
2
100
0
56
0
50
0
50
1.00
564868--564923
28
2.0
28
100
0
112
28
28
10
32
1.90
570076--570138
3
21.0
3
88
0
63
1
22
33
42
1.63
570073--570134
15
4.1
15
85
0
70
1
19
33
45
1.60
573786--573835
2
25.5
2
80
11
59
52
0
46
2
1.12
575789--575844
23
2.5
22
77
11
60
50
3
3
42
1.37
584183--584502
172
1.9
171
82
7
405
40
0
34
24
1.62
585437--585466
9
3.3
9
95
0
51
60
0
3
36
1.14
586109--586152
17
2.7
18
76
20
51
31
2
2
63
1.19
592414--592456
12
3.5
12
79
17
52
32
0
2
65
1.06
592470--592513
18
2.4
19
84
3
54
34
2
4
59
1.30
592725--592763
21
2.0
20
90
10
62
69
0
2
28
1.02
593674--593700
13
2.1
13
100
0
54
48
7
0
44
1.31
593971--594023
16
3.1
18
76
17
51
66
0
0
33
0.92
594963--595007
23
2.0
21
84
16
56
15
2
4
77
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
594969--595024
17
3.0
19
79
12
71
12
1
7
78
1.02
595427--595762
168
2.0
168
98
0
654
38
5
6
49
1.54
597509--597542
2
17.0
2
100
0
68
50
0
0
50
1.00
614093--614140
25
1.9
25
82
0
60
35
14
18
31
1.91
616808--616902
28
3.3
29
71
15
81
60
1
1
37
1.11
616887--616929
9
4.6
9
80
11
50
62
4
4
27
1.35
616888--616960
20
3.7
20
75
23
64
60
4
4
31
1.34
617132--617330
10
21.0
9
67
21
63
30
4
2
63
1.23
617137--617190
19
2.8
19
76
18
58
27
7
0
64
1.20
617214--617330
19
6.3
18
70
18
62
29
2
1
66
1.14
617213--617331
9
12.7
9
69
13
53
28
2
1
67
1.13
636848--636889
15
3.0
14
83
16
52
21
19
59
0
1.38
638780--638835
23
2.3
25
77
17
64
60
1
1
35
1.17
640206--640238
13
2.6
13
90
4
50
45
0
3
51
1.16
642735--642762
2
14.0
2
100
0
56
50
0
0
50
1.00
644520--644714
72
2.7
72
81
6
241
31
18
16
33
1.93
645555--645592
20
1.9
20
89
10
60
44
5
5
44
1.49
645968--645994
5
5.4
5
100
0
54
22
18
22
37
1.95

Tables:   1   2   3

The End!