genome.fa.s15305.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015305.1 Kokia drynarioides strain JFW-HI SEQ_130350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  751316

Tables:   1   2   3   

This is table  2  of  3  ( 294 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391189--391359	60	2.8	61	86	5	233	36	4	21	38	1.74
391179--391419	90	2.7	89	81	2	259	36	4	20	38	1.72
391269--391411	59	2.4	59	86	1	196	37	2	19	41	1.64
392576--392649	29	2.6	29	100	0	148	39	5	18	36	1.74
392654--392929	30	9.4	28	78	13	220	39	0	23	36	1.60
392709--392985	30	9.3	29	78	10	265	42	0	21	35	1.58
392705--392985	60	4.7	60	83	6	308	42	0	22	34	1.59
392670--392985	89	3.6	87	76	8	282	41	0	22	35	1.61
395449--395946	30	17.0	29	75	10	256	39	3	22	34	1.71
395581--395961	58	6.5	58	78	6	302	40	2	21	34	1.67
395581--395980	30	13.6	29	80	6	353	40	2	21	35	1.67
396795--396848	6	8.8	6	76	11	56	5	14	1	77	1.03
396797--396849	18	2.9	18	86	10	72	7	15	1	75	1.11
397332--397400	29	2.3	28	83	14	77	17	10	23	49	1.77
397808--397880	17	4.2	17	89	1	110	58	2	1	36	1.21
397811--397878	6	11.7	6	72	12	52	57	2	1	38	1.23
404358--404533	79	2.2	80	80	3	185	33	13	10	43	1.77
404813--404841	14	2.0	15	93	6	51	0	6	3	89	0.57
409514--409588	36	2.1	36	94	0	132	52	21	0	26	1.47
411287--411497	105	2.0	105	99	0	413	32	30	14	22	1.94
413517--413566	17	2.8	17	80	16	57	2	20	0	78	0.86
414645--414685	15	3.0	15	80	20	54	4	31	0	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426251--426326	36	2.1	36	87	0	107	30	26	22	21	1.99
428733--428772	17	2.3	18	86	4	55	57	7	12	22	1.60
428743--428786	18	2.5	17	85	7	61	59	11	11	18	1.61
429187--429236	24	2.1	24	85	7	66	2	38	0	60	1.09
433061--433225	41	3.9	41	73	16	122	7	4	18	69	1.32
433072--433225	65	2.4	64	78	11	170	7	5	18	68	1.34
433063--433251	43	4.4	43	73	16	135	7	4	17	69	1.29
438976--439044	29	2.4	29	90	4	104	36	0	4	59	1.17
438988--439046	29	2.0	29	96	0	109	35	0	1	62	1.05
439333--439374	21	2.0	21	81	9	50	52	4	0	42	1.22
440969--441001	16	2.1	16	94	0	57	36	15	24	24	1.93
446038--446111	31	2.4	30	82	10	80	54	1	5	39	1.32
449935--450267	106	3.1	106	98	0	648	38	16	15	30	1.90
457098--457122	3	8.3	3	100	0	50	68	0	32	0	0.90
457223--457266	2	22.0	2	85	0	61	0	43	0	56	0.99
457223--457264	16	2.6	16	96	0	75	0	42	0	57	0.99
460585--460649	3	21.3	3	88	3	94	35	1	1	61	1.15
467153--467177	3	8.3	3	100	0	50	0	32	32	36	1.58
467671--467755	46	1.9	43	81	11	100	58	4	3	32	1.36
468161--468193	16	1.9	17	88	11	50	54	0	3	42	1.15
484786--485103	29	10.7	30	79	8	305	33	4	26	34	1.78
484643--485103	58	7.9	58	79	10	353	33	5	27	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484754--485103	118	3.0	119	85	6	441	33	5	27	33	1.80
486546--486625	6	14.0	6	71	10	60	53	2	1	42	1.22
486546--486653	17	6.4	17	85	7	130	54	1	1	41	1.22
486958--487350	209	1.9	209	90	2	637	23	22	17	36	1.94
487265--487581	116	2.7	114	77	4	357	23	23	18	34	1.96
494448--494733	59	4.9	59	77	10	187	36	3	26	33	1.72
494543--494821	29	9.5	30	79	9	236	36	3	24	35	1.72
494543--494818	89	3.1	85	76	11	243	36	3	24	35	1.72
495575--495708	67	2.0	66	98	1	259	28	20	4	46	1.70
496041--496106	3	22.0	3	76	11	64	36	3	0	60	1.12
496781--496889	17	6.4	17	82	5	112	50	1	1	45	1.23
496798--496889	6	16.0	6	73	15	70	51	2	2	44	1.25
496814--496860	11	4.2	11	84	13	60	48	2	2	46	1.25
496781--496846	29	2.3	29	76	5	71	46	1	1	50	1.20
498665--498780	58	2.0	58	100	0	232	31	6	17	44	1.75
498677--498769	29	3.2	29	65	17	84	30	6	18	45	1.74
513500--513535	16	2.2	17	90	5	56	38	0	0	61	0.96
513517--513583	30	2.2	30	82	12	84	46	1	2	49	1.26
514103--514127	7	3.6	7	100	0	50	56	0	28	16	1.41
518694--518737	16	2.5	18	82	14	56	36	0	4	59	1.18
519173--519221	18	2.7	18	90	6	73	36	0	0	63	0.95
519185--519243	28	2.1	29	83	3	75	37	0	1	61	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519173--519250	18	4.3	18	75	10	70	39	0	1	58	1.06
522345--522403	17	3.5	17	76	4	57	44	25	1	28	1.64
523265--523357	32	2.8	33	73	9	91	32	0	46	21	1.52
523308--523444	33	4.2	33	77	9	127	29	2	43	23	1.68
523317--523441	66	1.9	66	81	6	155	29	3	44	23	1.69
523288--523450	33	5.0	32	75	9	116	30	2	44	22	1.66
523490--523616	51	2.5	51	83	2	166	29	10	23	36	1.88
530719--530820	50	2.0	50	96	0	186	20	14	35	29	1.93
533154--533312	74	2.1	74	85	6	214	25	11	8	53	1.66
534378--534460	15	5.4	14	72	16	67	50	9	7	32	1.62
534393--534470	15	5.0	16	71	12	72	50	10	8	30	1.67
534377--534470	31	3.0	31	96	0	170	50	9	8	31	1.65
535447--535484	14	2.6	15	83	8	51	55	0	0	44	0.99
545130--545227	28	3.6	27	72	18	78	36	3	1	59	1.20
545152--545318	9	18.3	9	68	19	71	34	2	1	60	1.22
545152--545235	37	2.3	37	79	6	91	33	3	1	61	1.20
545114--545301	9	20.7	9	67	18	72	35	2	2	60	1.21
548962--549002	20	2.1	20	86	4	57	53	4	0	41	1.22
550868--550924	24	2.4	24	100	0	114	45	0	0	54	0.99
550862--550917	11	4.9	11	80	8	67	46	0	1	51	1.11
554125--554199	30	2.5	31	82	8	102	44	5	17	33	1.71
554219--554281	27	2.3	27	81	13	67	30	9	28	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
554297--554409	30	3.8	29	80	5	120	36	0	29	34	1.58
554295--554524	30	7.9	30	74	10	115	34	2	26	37	1.69
554410--554524	60	1.9	60	83	3	151	32	4	22	40	1.74
556295--556320	7	3.7	7	100	0	52	53	0	0	46	1.00
557008--557429	39	10.8	38	72	17	228	23	17	32	25	1.97
557008--557257	117	2.1	117	85	2	333	24	17	33	25	1.96
557123--557374	78	3.2	78	84	1	317	23	17	33	25	1.96
556997--557299	117	2.6	116	80	6	317	23	18	32	26	1.97
557123--557413	78	3.7	75	80	5	260	23	17	33	25	1.96
557242--557491	117	2.1	117	84	1	313	26	19	31	23	1.98
559833--559862	3	10.0	3	100	0	60	0	33	0	66	0.92
564157--564199	21	2.0	21	86	8	61	30	20	11	37	1.89
569865--569940	29	2.6	29	85	0	107	34	6	26	32	1.82
569994--570072	29	2.6	30	80	4	88	36	0	27	35	1.57
569934--570117	30	6.2	30	77	10	123	34	2	26	36	1.69
573521--573560	21	1.9	21	85	10	55	25	0	15	60	1.35
573667--573717	26	2.0	26	84	3	68	47	0	33	19	1.50
577172--577232	30	2.1	29	90	3	95	59	13	4	22	1.53
585154--585180	12	2.2	12	100	0	54	70	7	7	14	1.32
585306--585367	27	2.3	27	100	0	124	54	16	8	20	1.67
585587--585641	24	2.2	26	87	6	78	70	9	1	18	1.22
588971--589005	16	2.3	15	90	5	52	34	2	25	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589992--590157	90	1.9	89	89	3	262	36	10	10	42	1.74
600416--600457	3	14.0	3	100	0	84	33	0	0	66	0.92
604451--604502	22	2.5	20	80	17	61	63	3	13	19	1.44
605306--605564	29	8.9	30	79	7	207	34	25	3	37	1.72
605306--605553	58	4.2	60	77	12	232	34	25	2	37	1.69
605671--605722	14	3.6	14	84	10	61	21	11	5	61	1.50
616996--617464	78	6.1	78	75	6	346	25	30	17	26	1.98
617042--617339	39	7.7	39	71	6	167	25	30	18	25	1.98
617254--617375	39	3.1	38	76	4	127	22	31	21	23	1.98
617120--617476	155	2.3	155	81	6	386	25	30	17	26	1.97

Tables:   1   2   3