genome.fa.s15305.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015305.1 Kokia drynarioides strain JFW-HI SEQ_130350, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  751316

Tables:   1   2   3   

This is table  3  of  3  ( 294 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617273--617476	39	5.3	39	69	11	132	24	31	17	26	1.97
617976--618000	7	3.6	7	100	0	50	44	0	0	56	0.99
617984--618067	34	2.5	33	90	5	132	38	1	4	55	1.28
617979--618076	6	16.8	6	73	11	62	39	1	4	55	1.26
617984--618069	17	5.1	17	82	2	111	38	1	4	55	1.28
619202--619392	98	2.0	95	93	5	330	41	12	14	30	1.83
619823--620235	29	14.2	29	73	11	267	35	23	2	38	1.69
619822--620240	57	7.2	58	76	9	268	35	23	2	37	1.69
619803--620182	57	6.5	58	76	8	317	36	23	2	37	1.68
620356--620397	14	2.9	15	82	10	61	19	7	4	69	1.31
631847--632124	137	2.0	137	98	0	538	25	17	12	43	1.85
635056--635266	30	7.1	30	72	12	139	37	0	23	37	1.62
635059--635352	60	5.0	58	73	14	208	38	2	22	36	1.67
635059--635311	89	2.8	87	78	12	221	38	1	22	37	1.64
635174--635348	30	5.9	28	72	18	99	41	2	20	35	1.67
635067--635352	88	3.2	87	77	12	201	38	2	22	36	1.68
636230--636272	20	2.2	20	87	4	61	16	13	4	65	1.43
636461--636508	10	4.8	10	75	10	53	54	0	2	43	1.12
637516--638112	39	15.4	39	73	11	334	24	18	32	24	1.97
637516--638267	78	9.7	78	77	5	589	25	18	31	24	1.98
637581--637957	117	3.2	117	85	0	477	23	18	32	25	1.97
638101--638229	39	3.3	39	80	6	136	30	18	28	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637548--638190	117	5.5	117	75	8	411	24	18	31	24	1.98
637931--638267	117	2.9	115	74	8	304	26	20	29	23	1.98
644956--645006	3	17.0	3	95	0	93	68	0	31	0	0.90
645143--645283	29	4.7	30	79	6	144	41	0	18	39	1.56
645103--645347	60	4.1	60	75	11	182	36	2	23	37	1.70
646476--646523	10	4.8	10	75	10	53	54	0	2	43	1.12
647952--647984	16	2.1	16	100	0	66	12	27	18	42	1.85
651628--651677	25	1.9	25	84	8	64	72	4	0	24	1.02
652692--652756	31	2.1	31	83	8	80	52	20	4	23	1.65
660556--660609	14	4.0	14	88	7	85	70	14	14	0	1.17
660560--660613	27	2.0	27	100	0	108	70	14	14	0	1.17
661069--661098	15	1.9	16	93	6	53	63	0	0	36	0.95
666324--666366	21	2.1	19	83	12	50	34	18	4	41	1.71
680109--680161	12	4.1	12	76	23	54	39	3	0	56	1.17
680117--680171	16	3.6	16	71	14	53	36	3	1	58	1.26
684486--684574	27	3.3	27	82	0	97	29	32	13	24	1.93
684628--684668	18	2.3	18	87	8	57	9	29	36	24	1.87
696076--696362	149	1.9	149	91	1	468	35	19	8	36	1.82
707697--707751	29	1.9	28	82	10	67	56	1	1	40	1.21
715450--715491	22	1.9	22	90	0	66	40	4	9	45	1.58
715740--715951	117	1.8	118	94	1	381	55	13	7	24	1.62
731168--731309	46	3.1	46	89	0	203	29	9	21	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731684--731721	14	2.7	15	84	12	53	42	13	0	44	1.43
731779--731823	14	3.1	14	84	9	56	6	15	0	77	0.96
731796--731843	21	2.4	21	82	6	64	2	25	0	72	0.95
732307--732350	19	2.3	18	85	14	54	13	0	4	81	0.83
732322--732361	21	1.9	21	89	0	62	10	2	5	82	0.91
743513--743592	30	2.7	29	81	9	83	48	3	5	42	1.42
743496--743585	28	3.1	28	75	16	78	51	2	4	42	1.34
746585--746619	2	18.0	2	94	5	63	48	0	0	51	1.00
750473--750524	24	2.3	23	83	9	63	17	7	3	71	1.25
750948--750997	26	1.9	26	84	8	66	32	4	0	64	1.12

Tables:   1   2   3

The End!