genome.fa.s15360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015360.1 Kokia drynarioides strain JFW-HI SEQ_130407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  850717

Tables:   1   2   3   

This is table  1  of  3  ( 329 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
751--834	39	2.2	39	78	10	91	28	17	20	33	1.95
768--847	39	2.0	40	87	2	117	31	16	18	33	1.93
13495--13519	6	4.2	6	100	0	50	36	64	0	0	0.94
14183--14242	28	2.1	29	84	9	79	38	0	20	41	1.52
29667--29913	52	4.7	54	83	6	274	38	21	15	24	1.92
29673--29913	79	3.1	79	88	0	356	37	21	15	24	1.93
29673--29913	27	9.1	27	84	4	296	37	21	15	24	1.93
37116--37210	48	2.0	47	97	2	181	23	18	8	49	1.75
37362--37456	23	4.2	22	82	2	100	40	24	22	13	1.90
44991--45040	25	2.0	25	84	7	66	44	8	6	42	1.58
45007--45063	25	2.2	27	81	12	66	38	10	10	40	1.74
53274--53320	21	2.3	21	85	3	60	59	6	0	34	1.23
58521--58575	28	2.0	29	85	7	78	29	0	5	65	1.15
59224--59248	13	1.9	13	100	0	50	40	8	12	40	1.72
63777--63824	24	2.0	24	100	0	96	62	0	12	25	1.30
67378--67581	40	5.1	40	86	0	266	25	17	25	32	1.97
76341--76408	34	2.0	34	94	0	118	27	20	20	30	1.98
80514--80550	3	12.3	3	100	0	74	35	0	0	64	0.94
81930--81968	19	2.1	18	85	4	51	53	15	2	28	1.55
83530--83585	4	14.0	4	88	0	76	21	3	28	46	1.68
89981--90017	19	1.9	19	94	0	65	37	18	5	37	1.74
92587--93034	195	2.3	195	83	2	542	29	17	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106998--107036	12	3.2	12	81	0	51	66	0	33	0	0.92
112633--112657	5	5.0	5	100	0	50	80	0	0	20	0.72
118996--119025	11	2.7	11	100	0	60	70	0	16	13	1.18
123878--123905	14	2.0	14	100	0	56	78	7	0	14	0.95
123895--123944	18	2.6	19	90	6	75	56	6	0	38	1.24
123949--124020	27	2.5	29	82	15	87	63	2	0	33	1.08
123963--124005	19	2.2	20	88	8	63	69	2	0	27	1.00
128740--128768	14	2.1	14	100	0	58	24	0	6	68	1.13
137215--137265	21	2.4	21	87	6	68	31	13	27	27	1.94
143096--143137	18	2.5	18	81	11	54	33	0	4	61	1.17
145216--145251	8	4.5	8	89	0	54	38	2	0	58	1.13
145237--145314	40	2.0	40	85	10	106	48	10	1	39	1.45
145277--145340	26	2.5	26	89	5	94	51	7	0	40	1.31
145237--145380	66	2.2	66	90	5	220	50	7	0	40	1.36
145303--145415	40	2.8	40	95	0	199	53	5	0	41	1.24
145329--145394	14	4.9	14	70	20	59	51	3	0	45	1.16
146818--146962	66	2.2	68	86	7	201	55	5	0	39	1.23
146937--146962	13	2.0	13	100	0	52	76	0	0	23	0.78
147502--147875	40	9.3	40	77	7	310	22	18	27	31	1.97
147483--147875	79	4.9	80	81	7	341	23	17	27	31	1.97
147522--147875	118	2.9	119	81	4	388	23	17	27	31	1.97
147703--147866	85	1.9	85	88	0	247	19	18	31	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147925--148020	50	1.9	50	82	4	122	27	19	16	36	1.93
155156--155326	63	2.7	64	88	8	244	52	4	0	43	1.20
155300--155341	21	2.0	21	90	4	66	76	0	2	21	0.90
159448--159926	149	3.3	146	89	3	732	44	9	3	42	1.53
160378--160429	9	5.8	9	88	0	59	67	15	0	17	1.24
163441--163484	21	2.1	21	84	12	56	75	4	0	20	0.98
166653--166711	31	1.9	31	86	6	84	22	3	1	72	1.08
167514--167555	20	2.1	20	86	0	57	30	28	11	28	1.92
173762--173900	26	5.5	26	73	10	108	18	28	17	35	1.93
173742--173882	24	5.7	24	70	8	77	17	29	19	34	1.94
173751--173895	50	2.9	50	85	4	202	18	28	18	34	1.95
192378--192415	20	1.9	20	94	0	67	55	5	2	36	1.37
213668--214134	233	2.0	233	89	0	718	28	28	13	29	1.95
217193--217337	51	2.8	51	93	0	254	35	19	11	34	1.87
217537--217570	16	2.1	16	88	0	50	41	26	14	17	1.88
240711--240745	15	2.2	16	90	5	54	25	5	8	60	1.49
241017--241051	13	2.6	14	90	4	54	14	2	8	74	1.17
271456--271542	22	4.2	21	75	19	92	8	6	17	67	1.38
271453--271562	30	3.6	29	70	13	87	9	6	16	68	1.37
271453--271562	31	3.6	30	72	8	96	9	6	16	68	1.37
271569--271639	24	3.0	23	83	8	79	9	4	14	71	1.26
271569--271653	12	7.2	12	75	9	68	9	3	15	71	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271567--271651	36	2.4	36	84	9	104	9	3	16	70	1.27
271621--271675	20	2.8	20	86	5	67	7	1	20	70	1.20
290115--290151	18	2.1	18	100	0	74	32	16	40	10	1.83
292762--292797	4	8.8	4	93	6	63	0	22	0	77	0.76
303444--303538	26	3.7	26	77	5	102	29	24	15	30	1.96
303529--303565	19	1.9	19	94	0	65	24	18	18	37	1.94
304883--304948	19	3.5	19	85	0	87	27	25	15	31	1.95
312058--312093	11	3.4	11	92	3	56	55	0	0	44	0.99
314142--314227	20	4.6	20	77	12	76	12	6	11	68	1.38
314444--314500	19	3.0	19	75	22	57	31	0	3	64	1.10
320571--320596	6	4.3	6	100	0	52	84	0	0	15	0.62
320709--320765	27	2.2	25	84	6	69	40	3	3	52	1.35
320739--320784	19	2.4	20	82	10	60	36	2	6	54	1.39
322816--322855	18	2.2	18	86	8	55	30	15	15	40	1.87
323894--323933	16	2.5	16	88	8	55	50	2	0	47	1.14
324436--324492	30	1.9	30	88	0	87	35	0	10	54	1.35
327150--327204	27	2.0	27	82	6	67	23	41	5	29	1.76
327447--327499	26	2.0	26	85	0	70	28	0	11	60	1.31
327510--327549	21	1.9	21	84	0	53	17	0	27	55	1.43
327564--327616	21	2.5	21	81	3	61	18	0	30	50	1.47
327640--327722	29	2.8	28	72	15	78	45	28	1	24	1.61
327682--327738	7	7.9	7	75	14	53	52	26	0	21	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327808--327872	23	2.8	24	85	4	96	52	18	3	26	1.60
330995--331066	27	2.7	27	84	0	99	27	38	15	18	1.90
332395--332500	49	2.2	48	89	5	160	33	0	3	62	1.20
336271--336313	21	2.1	21	78	4	52	44	25	2	27	1.66
336537--336595	29	2.0	29	83	3	73	37	20	6	35	1.79
337006--337044	3	13.0	3	100	0	78	66	0	0	33	0.92
337043--337417	6	62.5	6	89	0	471	65	26	1	7	1.25
337043--337417	9	41.7	9	86	0	471	65	26	1	7	1.25
337416--337628	44	5.0	44	87	5	255	43	11	22	23	1.85
344648--344694	17	3.1	17	66	33	52	23	12	29	34	1.92
352096--352141	18	2.5	20	82	13	62	15	10	0	73	1.08
352100--352142	19	2.3	19	84	8	52	13	9	0	76	1.01
353698--353954	41	6.0	41	81	5	228	29	17	18	34	1.94
353744--353954	81	2.5	82	83	4	253	28	18	18	34	1.95
353744--353954	41	5.0	41	85	4	262	28	18	18	34	1.95
354231--354428	49	4.0	49	77	5	157	18	28	18	34	1.94
354254--354428	49	3.6	49	77	9	158	18	29	17	34	1.93
358870--358906	14	2.6	14	86	0	56	43	29	8	18	1.79
360364--360706	119	2.9	116	78	9	345	37	2	25	34	1.70
360363--360706	30	11.6	29	81	6	289	37	2	25	34	1.70
362959--362992	17	2.0	17	100	0	68	35	17	23	23	1.95
372206--372234	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372431--372494	27	2.3	28	84	10	78	21	1	6	70	1.18
376621--376842	30	7.4	30	73	6	137	35	19	6	38	1.77
376622--376844	60	3.7	60	80	5	263	34	19	6	39	1.77
376658--376823	90	1.8	90	80	2	199	33	19	7	39	1.80
376772--376852	30	2.7	30	74	9	76	30	19	7	41	1.79
378464--378501	5	7.6	5	87	0	58	78	2	2	15	0.97
379688--379726	19	2.1	19	100	0	78	69	5	0	25	1.09
381077--381102	12	2.2	12	100	0	52	23	0	7	69	1.14
384254--384307	18	2.9	18	83	2	54	27	25	18	27	1.98
391165--391247	24	3.5	24	93	0	139	22	21	26	28	1.99

Tables:   1   2   3