genome.fa.s15360.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015360.1 Kokia drynarioides strain JFW-HI SEQ_130407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  850717

Tables:   1   2   3   

This is table  3  of  3  ( 329 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
661519--661758	58	4.2	59	75	13	200	35	2	25	36	1.71
661458--661668	116	1.8	116	81	8	268	35	2	23	38	1.70
661441--661788	29	12.1	28	74	13	139	34	2	25	36	1.71
661640--661740	52	1.9	52	84	11	136	35	4	29	29	1.79
661510--661760	29	8.9	28	75	11	140	35	3	25	35	1.72
663398--663495	11	8.7	11	74	4	70	54	2	3	40	1.28
663404--663499	17	6.0	17	76	14	105	55	2	3	39	1.28
663399--663489	28	3.1	27	75	20	92	53	1	3	41	1.24
663408--663499	45	2.0	45	91	0	148	55	2	3	39	1.28
663925--664015	38	2.4	39	84	3	121	24	14	34	27	1.94
663925--664365	39	11.4	37	72	14	252	24	18	33	24	1.97
664039--664291	117	2.2	117	83	1	328	23	16	34	25	1.96
664039--664326	117	2.5	114	82	6	326	23	17	34	24	1.96
666614--666640	3	9.0	3	100	0	54	0	33	0	66	0.92
675908--676024	58	2.0	58	96	0	216	35	11	16	36	1.84
676346--676671	29	11.1	29	73	12	197	35	2	26	35	1.69
676346--676671	58	5.6	57	76	9	266	35	2	26	35	1.69
676352--676676	117	2.8	117	80	6	370	36	2	26	35	1.70
678352--678415	11	5.7	11	77	3	56	54	1	1	42	1.19
678352--678416	6	11.5	6	76	12	66	55	1	1	41	1.18
678352--678419	17	4.1	17	81	7	68	55	1	1	41	1.18
678356--678415	28	2.1	28	93	6	104	53	1	1	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679592--679624	2	16.5	2	100	0	66	51	0	0	48	1.00
690022--690057	4	9.2	4	87	6	56	69	0	30	0	0.89
693035--693119	7	12.3	7	71	12	50	22	1	29	47	1.59
693035--693112	28	2.9	27	84	3	95	23	1	28	47	1.59
693333--693378	21	2.1	22	88	4	67	23	15	32	28	1.95
693372--693507	45	3.0	44	90	1	191	19	21	26	32	1.97
696301--696378	23	3.3	22	71	20	59	65	8	1	24	1.29
697485--697527	3	14.3	3	100	0	86	65	0	34	0	0.93
699080--699538	228	2.0	228	92	0	767	22	17	15	44	1.87
699878--699914	17	2.1	18	90	5	58	27	13	10	48	1.75
700997--701077	32	2.5	32	89	0	126	28	2	17	51	1.58
703724--703826	36	2.9	36	91	1	154	35	23	12	28	1.91
703907--704324	23	18.3	23	85	2	538	45	14	6	33	1.70
709067--709104	17	2.2	18	90	4	60	15	13	13	57	1.65
712846--712986	18	7.8	18	78	6	142	24	20	22	32	1.98
712846--713000	54	2.9	54	89	0	229	25	20	22	31	1.98
712917--712994	18	4.3	18	78	12	79	26	21	24	26	1.99
716316--716361	21	2.0	24	88	12	71	23	26	17	32	1.97
724222--724308	43	2.0	43	97	0	165	31	13	21	33	1.93
734528--734766	52	4.6	52	90	0	370	25	14	24	35	1.93
737549--737589	22	1.9	21	85	5	55	56	7	14	21	1.63
738546--738798	123	2.0	123	98	0	488	36	19	12	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741403--741463	32	1.9	32	89	0	95	21	26	21	31	1.98
746474--746509	17	2.2	17	90	5	56	55	11	13	19	1.68
754018--754070	21	2.5	22	87	3	72	24	1	13	60	1.43
780885--781089	68	3.0	68	95	0	365	24	33	9	31	1.88
781973--782102	64	2.0	64	98	0	251	26	13	23	37	1.91
782537--782596	19	3.2	17	74	21	50	80	0	16	3	0.85
782539--782593	12	4.3	12	80	15	58	78	0	18	3	0.90
782537--782584	26	1.9	26	91	8	82	79	0	16	4	0.89
787785--787815	14	2.3	13	94	5	53	45	6	0	48	1.28
798703--798734	2	16.0	2	93	0	55	46	0	3	50	1.17
805149--805227	6	12.3	6	73	12	50	48	15	15	21	1.81
805149--805246	33	3.0	33	76	11	103	44	14	18	22	1.85
805160--805215	20	2.8	19	79	12	60	46	14	14	25	1.82
806623--806749	57	2.2	59	87	5	179	47	0	0	52	1.00
806672--806721	16	3.3	16	72	16	61	56	0	0	44	0.99
806623--806749	29	4.4	29	85	6	168	47	0	0	52	1.00
806631--806707	13	5.5	13	71	17	57	44	0	0	55	0.99
807932--807962	11	2.7	12	90	10	55	51	0	32	16	1.44
807973--808039	30	2.2	30	84	7	91	49	1	0	49	1.10
807980--808069	28	3.1	28	87	4	117	48	1	0	50	1.08
808009--808062	16	3.6	16	71	19	53	51	0	0	48	1.00
812864--812903	17	2.4	17	82	0	53	22	17	12	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813946--813984	20	2.0	20	89	0	60	58	12	5	23	1.54
827152--827341	78	2.4	78	85	4	231	25	32	18	23	1.97
827170--827302	39	3.4	38	69	15	101	27	33	16	23	1.96
827506--827729	39	5.8	38	69	14	116	25	30	18	25	1.98
827411--827827	78	5.4	78	78	0	368	24	28	18	27	1.98
827403--827751	39	8.9	39	64	6	107	24	28	18	27	1.98
833240--833371	57	2.2	56	80	10	147	60	12	17	9	1.58
835116--835621	99	5.1	99	74	8	386	37	18	19	25	1.94
835648--836169	49	10.6	49	77	10	390	39	15	23	21	1.92
835667--836153	98	4.9	97	80	6	453	39	14	24	21	1.91
835648--836299	147	4.4	147	80	6	558	39	14	24	21	1.91
837712--837740	2	14.5	2	100	0	58	51	0	0	48	1.00
837770--837798	13	2.1	14	93	6	51	37	3	0	58	1.15
838844--838874	3	10.3	3	92	0	53	32	3	0	64	1.09
840123--840187	18	3.7	17	85	6	76	41	0	3	55	1.15
840155--840250	6	16.7	6	69	12	67	43	3	2	51	1.29
840122--840250	17	7.4	17	79	4	141	42	2	3	51	1.30
840605--840666	29	2.1	29	93	0	106	43	11	19	25	1.84
842082--842451	30	12.5	30	73	14	204	34	31	3	31	1.75
842066--842505	59	7.4	58	80	9	328	33	31	3	31	1.74
842064--842351	118	2.4	118	85	4	384	35	31	2	30	1.72
842066--842441	90	4.2	90	81	9	362	34	30	3	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
842066--842489	30	14.3	30	70	17	160	34	30	3	31	1.74

Tables:   1   2   3

The End!