genome.fa.s15360.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015360.1 Kokia drynarioides strain JFW-HI SEQ_130407, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  850717

Tables:   1   2   3   

This is table  2  of  3  ( 329 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393720--393788	18	3.8	18	80	0	75	30	30	20	18	1.97
393720--393788	36	1.9	36	84	0	93	30	30	20	18	1.97
398017--398112	48	2.0	48	97	0	183	33	11	14	40	1.82
400009--400059	19	2.7	19	100	0	102	17	33	9	39	1.83
403971--404052	14	5.7	14	68	18	53	47	0	2	50	1.14
403944--404095	61	2.5	59	83	10	175	42	0	2	53	1.19
404058--404113	26	2.2	25	81	6	67	41	0	1	57	1.09
404881--405072	96	2.0	96	84	8	248	35	13	20	29	1.91
405299--405481	29	6.2	30	76	14	177	27	4	33	33	1.77
405299--405481	59	3.1	59	90	2	289	27	4	33	33	1.77
407379--407469	17	5.4	17	79	6	96	59	2	1	37	1.17
407379--407436	6	10.0	6	75	14	50	56	1	1	39	1.19
407381--407438	11	5.1	11	79	10	55	58	1	1	37	1.18
412949--412982	14	2.4	14	90	0	50	41	8	17	32	1.80
413201--413268	30	2.3	29	89	2	100	36	2	4	55	1.35
414485--414530	21	2.2	22	84	7	60	65	0	13	21	1.26
414538--414607	33	2.1	33	89	0	104	54	7	18	20	1.67
418881--418942	28	2.2	28	91	0	97	27	12	30	29	1.93
418899--419061	29	5.6	28	71	18	120	35	7	26	30	1.84
418985--419077	29	3.1	30	68	26	72	37	5	26	30	1.79
418922--419118	59	3.3	60	80	3	204	35	6	27	30	1.81
419068--419197	30	4.3	31	75	11	103	36	4	27	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419094--419236	30	4.8	29	79	6	135	37	3	23	35	1.72
420087--420112	9	2.9	9	100	0	52	46	0	0	53	1.00
434194--434271	31	2.6	30	80	6	86	62	7	2	26	1.35
436400--436465	24	2.8	24	78	0	78	31	21	22	24	1.98
446529--446614	39	2.2	39	85	2	111	27	27	16	27	1.97
449858--449904	17	2.8	17	84	12	69	14	17	14	53	1.74
452438--452512	17	4.5	17	83	6	91	40	1	2	56	1.22
452437--452512	33	2.3	34	81	9	93	40	1	2	55	1.22
452512--452559	19	2.5	20	83	10	55	50	22	6	20	1.71
453876--453977	30	3.5	30	81	5	118	40	17	0	41	1.56
453983--454100	30	4.1	27	74	15	85	38	23	0	37	1.55
453988--454071	30	2.8	29	80	7	96	41	20	0	38	1.52
453988--454500	29	17.7	30	69	16	228	36	25	4	33	1.77
453996--454174	57	3.1	57	78	11	161	39	25	1	34	1.66
454094--454311	86	2.5	86	81	6	264	38	25	4	31	1.75
454084--454347	57	4.6	55	77	12	214	37	25	3	33	1.74
454004--454404	143	2.8	138	74	12	362	37	25	3	33	1.74
454330--454500	60	2.9	59	76	7	177	30	28	8	32	1.87
457860--457894	17	1.9	19	88	11	56	22	17	8	51	1.72
458690--458728	15	2.5	15	87	4	51	89	5	2	2	0.63
458776--458831	3	18.7	3	96	0	103	69	0	30	0	0.89
459672--459725	13	4.2	13	81	13	67	83	0	9	7	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459674--459742	17	3.9	17	76	14	61	82	0	11	5	0.83
459669--459779	9	12.0	9	74	10	91	81	2	12	3	0.94
459684--459791	7	15.6	7	69	18	66	80	2	14	1	0.91
459678--459727	13	3.9	13	85	15	68	82	0	12	6	0.85
459696--459772	31	2.5	32	78	19	83	80	3	14	1	0.92
459683--459763	10	7.5	11	78	18	73	81	2	13	2	0.90
460800--461108	50	6.2	50	73	9	234	35	14	30	18	1.92
461668--461824	85	1.8	85	81	0	197	36	17	24	22	1.95
461489--462208	209	3.5	209	87	2	1000	38	18	21	22	1.93
462140--462745	209	2.9	204	83	6	525	36	16	23	23	1.95
461860--462526	370	1.8	370	86	1	969	36	18	22	22	1.95
462206--462746	209	2.6	209	89	2	755	34	17	23	23	1.96
462589--462859	123	2.2	124	82	3	323	35	18	23	22	1.95
463268--463352	17	5.1	17	80	2	93	35	3	4	56	1.37
463268--463349	34	2.5	34	90	4	132	35	3	4	56	1.39
463369--463416	19	2.5	20	89	3	71	47	25	6	20	1.73
464682--465225	29	18.6	29	74	12	309	36	25	2	35	1.69
464696--464958	60	4.4	58	74	12	196	36	23	1	38	1.64
464875--465048	57	3.0	58	82	5	163	37	25	1	35	1.64
464903--465225	88	3.7	88	82	3	377	36	28	2	32	1.70
465236--465339	28	3.7	27	75	11	93	35	26	3	33	1.75
465206--465300	28	3.3	28	70	20	72	35	23	6	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464700--465339	29	21.9	29	73	13	209	35	26	2	35	1.71
465203--465355	29	5.3	29	71	7	114	34	27	5	32	1.81
465486--465533	16	3.2	16	75	22	50	25	10	4	60	1.47
471699--471792	27	3.4	27	88	4	127	25	13	24	36	1.93
471776--471836	24	2.5	24	89	0	95	26	22	21	29	1.99
473621--473657	12	3.1	12	92	0	56	0	5	5	89	0.60
475684--475753	34	2.1	34	97	0	131	35	28	2	32	1.72
475689--475744	17	3.3	17	67	18	53	37	23	3	35	1.72
481968--481998	10	3.1	10	100	0	62	38	19	9	32	1.84
482160--482387	52	4.4	51	84	4	262	33	23	15	27	1.95
482163--482392	104	2.2	104	85	4	304	33	23	15	26	1.95
491084--491153	7	9.9	7	72	14	54	22	0	31	45	1.53
491084--491127	13	3.1	14	77	9	54	20	0	29	50	1.49
491084--491144	28	2.1	29	88	8	90	22	0	29	47	1.52
491090--491171	15	5.7	14	74	14	69	21	0	34	43	1.53
501330--501361	13	2.4	14	90	10	50	62	6	9	21	1.47
509264--509317	17	3.1	17	76	5	54	53	12	11	22	1.70
509274--509317	18	2.5	18	81	3	54	54	13	11	20	1.69
511636--511679	20	2.2	20	84	15	56	72	2	13	11	1.21
518130--518199	30	2.3	31	80	7	81	27	15	18	38	1.91
519495--519545	25	2.0	26	88	3	77	43	11	7	37	1.71
519748--519854	19	5.8	18	70	12	76	51	4	0	42	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519764--519854	36	2.4	37	75	15	89	50	5	1	42	1.32
519936--519975	5	8.4	5	81	18	50	37	0	0	62	0.95
519935--519974	9	4.3	9	90	3	62	40	0	0	60	0.97
520809--520878	34	2.1	34	97	0	131	38	21	10	30	1.86
546457--546497	13	3.1	13	82	6	55	48	0	0	51	1.00
546454--546498	14	3.3	13	78	9	54	46	0	0	53	1.00
546805--546837	13	2.4	14	85	5	50	42	12	0	45	1.41
549530--549578	23	2.1	24	88	3	73	46	10	8	34	1.67
553587--553622	6	6.0	6	93	0	63	50	2	0	47	1.15
554248--554289	19	2.1	21	86	8	61	64	0	4	30	1.14
567450--567515	17	3.9	17	81	0	69	16	15	13	54	1.71
568766--568797	11	2.8	12	90	9	57	50	0	0	50	1.00
573261--573338	41	1.9	41	100	0	156	43	16	14	25	1.85
573313--573361	11	4.5	11	85	10	73	48	24	10	16	1.76
575842--575914	11	6.7	11	76	9	78	2	15	1	80	0.89
575843--575912	19	3.4	18	74	25	68	2	14	1	81	0.88
577264--577307	20	2.2	20	84	8	54	77	2	2	18	0.98
579303--579329	13	2.1	13	100	0	54	29	0	40	29	1.57
581506--581588	38	2.2	38	82	4	96	33	24	12	30	1.91
590871--590905	14	2.4	14	85	4	52	31	5	17	45	1.71
600166--600215	17	2.9	17	77	11	57	52	8	18	22	1.71
606962--606996	18	1.9	18	100	0	70	45	11	5	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611527--611571	22	2.0	22	95	0	81	35	15	24	24	1.94
636665--636718	20	2.7	19	83	11	63	14	18	18	48	1.82
645649--645716	7	9.7	7	83	0	82	20	26	25	27	1.99
645652--645716	28	2.3	28	89	0	94	21	27	24	26	1.99
649788--649842	27	2.0	27	100	0	110	36	25	7	30	1.83
650702--650738	19	1.9	19	100	0	74	54	18	16	10	1.71
653380--653583	37	5.5	37	86	2	257	38	30	19	12	1.88
656808--656863	26	2.2	26	83	0	67	37	16	19	26	1.92
661338--661377	18	2.2	18	86	4	53	75	0	5	20	0.99
661441--661525	30	2.9	29	74	10	82	32	3	25	37	1.73

Tables:   1   2   3