genome.fa.s15382.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015382.1 Kokia drynarioides strain JFW-HI SEQ_130429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  764726

Tables:   1   2   3   

This is table  2  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302350--302771	205	2.1	206	88	2	616	35	20	21	22	1.96
303198--303255	17	3.4	17	82	0	80	44	1	1	51	1.21
303923--303972	20	2.5	20	78	15	59	54	4	4	38	1.38
305159--305476	29	10.7	29	79	8	329	35	29	3	32	1.73
305158--305565	29	13.8	29	75	10	326	35	28	2	33	1.72
305164--305565	59	6.8	58	81	5	353	35	28	2	33	1.73
305162--305583	117	3.6	117	78	7	288	35	28	3	32	1.74
307088--307257	84	2.0	84	95	0	304	52	14	8	23	1.69
307242--307507	114	2.3	113	79	10	292	52	14	10	22	1.71
308719--308768	23	2.1	26	78	17	63	12	12	0	76	1.04
308724--308768	22	2.0	24	86	8	67	13	11	0	75	1.05
313426--313462	18	2.1	18	89	0	56	54	0	8	37	1.30
315638--315672	3	11.7	3	93	0	61	28	0	2	68	1.04
318522--318569	25	2.0	24	87	4	69	31	6	4	58	1.42
319209--319240	2	16.0	2	93	0	55	3	46	0	50	1.17
323048--323096	22	2.2	22	85	0	62	46	0	2	51	1.12
331689--331785	44	2.2	44	100	0	194	19	23	31	24	1.98
336734--336952	78	2.8	79	84	4	273	20	18	27	32	1.96
338091--338123	17	1.9	17	93	0	57	12	6	36	45	1.66
338761--338854	39	2.4	39	82	7	102	29	22	15	31	1.95
338835--338990	78	2.0	78	85	5	208	25	18	18	37	1.94
343025--343105	30	2.7	30	84	3	83	51	1	2	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343048--343106	30	2.0	30	93	0	100	50	1	0	47	1.11
346920--346944	2	12.5	2	100	0	50	48	0	0	52	1.00
347246--347288	18	2.4	18	84	0	59	65	2	0	32	1.06
347376--347419	21	2.2	20	88	12	63	56	0	2	40	1.11
347376--347419	20	2.1	21	88	12	65	56	0	2	40	1.11
348080--348122	8	5.4	8	91	0	50	55	0	2	41	1.12
348085--348120	2	18.0	2	94	0	63	52	0	0	47	1.00
350594--350696	32	3.2	31	72	12	75	24	1	28	45	1.64
350703--350794	45	2.0	45	85	4	123	21	2	32	43	1.65
351048--351076	15	1.9	15	100	0	58	13	0	20	65	1.26
351685--351733	19	2.5	19	80	9	55	57	4	0	38	1.18
351685--351723	18	2.1	19	85	4	53	58	2	0	38	1.12
368280--368313	8	4.4	8	96	3	61	0	8	0	91	0.43
368546--368579	7	4.9	7	96	0	59	32	0	0	67	0.91
373890--373988	49	2.0	50	88	2	146	47	5	17	30	1.69
375209--375259	21	2.3	22	86	6	68	19	1	7	70	1.21
378123--378249	63	2.0	65	93	3	222	36	3	1	59	1.23
379915--380061	72	2.0	72	96	0	267	22	40	14	22	1.91
381546--381679	29	4.5	29	80	5	142	35	23	1	38	1.64
381746--381814	35	2.0	35	88	0	102	18	8	11	60	1.56
383212--383304	48	1.9	48	84	4	125	37	15	24	22	1.93
383003--383622	209	3.0	208	84	4	755	38	15	21	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383991--384058	28	2.5	28	78	7	77	48	14	4	32	1.64
385593--385759	29	5.7	29	75	15	119	34	26	4	34	1.76
385699--385766	29	2.4	28	82	4	100	36	27	2	32	1.72
387800--387871	29	2.6	29	75	14	71	29	2	4	63	1.27
391547--391574	2	14.0	2	100	0	56	50	0	0	50	1.00
408935--409072	69	2.0	68	94	1	240	28	12	17	41	1.86
410493--410554	23	2.7	23	77	2	72	45	3	1	50	1.27
415761--415800	21	1.9	21	85	10	55	45	15	30	10	1.78
417035--417129	21	4.6	20	68	6	64	35	2	3	58	1.25
419702--419870	84	2.0	84	100	0	338	37	24	14	23	1.92
422574--422685	41	2.7	42	78	6	129	28	16	19	35	1.93
425484--425642	43	3.7	43	88	3	223	34	26	17	21	1.95
425484--425641	85	1.9	85	86	2	228	34	25	17	21	1.95
425484--425669	43	4.3	43	81	4	205	33	26	17	22	1.96
425974--426025	24	2.2	24	100	0	104	15	34	5	44	1.70
427292--427370	40	2.0	40	94	0	140	29	18	13	37	1.90
427543--427610	33	2.0	34	91	8	113	20	30	14	33	1.93
427601--427634	16	2.1	16	100	0	68	17	32	20	29	1.96
429924--429977	18	3.1	18	81	7	67	44	0	3	51	1.19
431882--432012	60	2.2	60	84	1	165	37	30	2	29	1.70
431877--432055	29	6.1	29	78	10	150	34	32	2	30	1.70
431877--432060	59	3.1	58	73	12	153	34	32	2	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443387--443433	23	2.1	21	84	7	58	68	4	0	27	1.08
444222--444263	22	2.0	22	85	4	59	14	16	21	47	1.82
445022--445116	47	2.0	47	95	0	172	24	22	11	42	1.86
445495--445534	20	2.0	20	85	9	55	37	0	0	62	0.95
445517--445568	15	3.5	15	72	0	50	34	1	5	57	1.33
456881--456914	17	2.0	17	88	11	52	32	0	2	64	1.08
456881--456913	16	2.0	17	88	5	50	33	0	3	63	1.10
457907--457933	14	1.9	14	100	0	54	51	3	0	44	1.19
464037--464063	3	9.0	3	100	0	54	66	0	33	0	0.92
465371--465414	7	6.3	7	97	0	79	29	27	11	31	1.91
470242--470399	78	2.0	78	100	0	316	31	25	8	33	1.87
473395--473438	9	5.0	9	80	2	54	63	0	0	36	0.95
473418--473446	10	3.0	10	95	5	51	72	0	0	27	0.85
473394--473446	18	2.9	18	72	13	54	64	0	0	35	0.94
475065--475121	23	2.5	23	91	0	96	42	19	29	8	1.81
476251--476310	22	2.7	23	78	2	68	51	1	1	45	1.21
478252--478304	24	2.2	24	90	6	81	11	9	39	39	1.74
478332--478361	12	2.5	12	88	0	51	16	6	50	26	1.70
481403--481443	6	6.8	6	100	0	82	31	0	51	17	1.46
483694--483789	24	4.3	23	73	16	78	46	0	4	48	1.21
483682--483781	18	5.6	18	74	7	87	43	0	4	53	1.19
483715--483783	6	11.5	6	72	10	52	44	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484420--484461	18	2.3	19	91	4	68	45	4	2	47	1.36
485631--485924	59	5.0	59	94	0	489	31	35	4	28	1.78
485641--485915	30	9.2	31	76	19	282	31	34	4	29	1.77
485631--485924	119	2.5	118	93	1	498	31	35	4	28	1.78
485646--485924	29	9.4	29	76	19	274	31	35	4	28	1.78
488644--488768	10	13.7	9	72	20	84	64	2	0	33	1.07
488647--488768	34	3.3	38	77	16	100	63	2	0	33	1.07
488647--488767	27	4.5	26	74	19	81	63	2	0	33	1.08
488644--488726	19	4.5	18	75	18	73	63	1	0	34	1.02
489359--489392	16	2.2	15	89	5	50	38	0	0	61	0.96
491762--491820	30	1.9	31	86	6	84	62	5	1	30	1.26
491778--491860	39	2.1	39	82	4	96	63	2	0	33	1.07
492815--492862	22	2.2	22	88	0	69	29	14	12	43	1.82
496036--496061	3	8.7	3	100	0	52	34	30	0	34	1.58
501958--502017	22	2.7	22	75	12	52	55	1	0	43	1.10
505490--505547	2	29.0	2	92	0	98	48	3	0	48	1.18
506588--506742	67	2.3	67	87	0	229	18	14	24	42	1.87
507729--507775	17	2.7	18	93	3	78	48	0	4	46	1.21
507943--507979	15	2.3	16	90	9	58	51	8	0	40	1.32
507953--507986	14	2.3	15	90	5	52	41	8	0	50	1.34
515682--515732	16	3.2	16	72	10	50	15	27	0	56	1.39
519516--519558	19	2.3	19	80	15	54	76	4	0	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520819--520858	20	2.0	20	85	5	53	12	2	22	62	1.42
524555--524602	13	3.7	13	83	8	53	18	4	2	75	1.07
524549--524602	6	8.7	6	82	9	56	18	3	1	75	1.03
541978--542074	35	2.8	35	82	7	108	71	18	2	8	1.21
542026--542083	22	2.6	22	81	8	64	70	22	1	5	1.16
542036--542101	22	3.0	22	78	8	62	66	24	4	4	1.29
546384--546415	10	3.2	10	95	0	55	43	0	21	34	1.53
548625--548685	30	2.0	31	84	9	81	50	0	3	45	1.17
558402--558444	19	2.4	18	88	7	61	62	6	0	30	1.21
562750--562775	10	2.6	10	100	0	52	42	0	57	0	0.98

Tables:   1   2   3