genome.fa.s15382.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015382.1 Kokia drynarioides strain JFW-HI SEQ_130429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  764726

Tables:   1   2   3   

This is table  3  of  3  ( 291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569887--569915	15	1.9	15	100	0	58	6	0	13	79	0.93
587813--587934	25	5.1	22	79	9	109	13	24	19	41	1.88
587813--587934	48	2.5	47	80	14	133	13	24	19	41	1.88
587899--587973	39	1.9	39	91	0	123	13	22	20	44	1.86
587937--588021	23	3.7	23	73	18	86	12	22	17	47	1.82
589502--589573	31	2.4	31	83	2	92	50	12	11	26	1.73
590880--590947	30	2.3	30	79	5	75	22	11	14	51	1.74
591038--591102	31	2.1	31	91	2	105	26	12	21	40	1.88
592009--592151	72	2.0	72	91	0	232	9	16	27	46	1.78
601407--601450	17	2.6	18	82	17	58	56	2	4	36	1.32
605999--606028	15	2.0	15	93	0	51	56	3	6	33	1.42
610146--610172	4	6.8	4	100	0	54	25	0	0	74	0.83
611207--611238	11	2.6	13	85	14	50	65	0	3	31	1.08
618208--618239	15	2.1	16	94	5	57	78	6	0	15	0.95
622950--623055	42	2.7	38	84	11	124	33	10	16	39	1.82
623060--623151	47	2.0	47	86	0	130	34	27	14	23	1.93
624288--624670	61	6.3	61	78	6	352	36	16	18	28	1.93
624288--624670	119	3.2	122	79	7	379	36	16	18	28	1.93
627177--627201	2	12.5	2	100	0	50	48	0	0	52	1.00
627951--627982	13	2.5	13	95	5	57	46	0	0	53	1.00
631745--631769	4	6.2	4	100	0	50	28	24	48	0	1.52
636632--636671	3	13.3	3	83	0	53	5	35	2	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662382--662425	22	2.0	22	100	0	88	31	13	22	31	1.93
669737--669792	24	2.3	24	96	0	103	30	25	26	17	1.97
675863--675917	23	2.4	23	79	8	60	41	1	5	50	1.36
679361--679397	3	12.3	3	100	0	74	32	0	0	67	0.91
683801--683843	22	2.0	22	86	9	61	39	2	0	58	1.11
683826--683867	23	1.9	22	85	9	59	47	4	0	47	1.23
684036--684064	15	1.9	15	100	0	58	55	3	0	41	1.17
697606--697636	6	5.2	6	100	0	62	0	48	0	51	1.00
697664--697702	18	2.2	18	86	4	53	25	53	7	12	1.65
703264--703295	6	5.3	6	100	0	64	34	0	34	31	1.58
706855--706947	36	2.6	36	85	0	132	19	20	47	12	1.82
707042--707107	24	2.8	24	92	0	105	27	0	59	13	1.35
709044--709074	16	1.9	16	93	0	53	35	9	12	41	1.76
710717--710799	41	2.0	41	95	0	148	43	12	16	27	1.84
726370--726401	3	10.7	3	93	0	55	68	0	28	3	1.04
727332--727473	74	1.9	74	89	0	221	41	12	23	21	1.88
739100--739127	7	4.0	7	100	0	56	42	0	0	57	0.99
739100--739165	21	3.1	21	76	6	62	36	1	1	60	1.15
746439--746891	224	2.0	224	100	0	906	40	13	5	40	1.69
747410--747450	19	2.1	19	86	9	55	56	21	17	4	1.60
753603--753661	21	2.8	20	76	19	57	33	0	3	62	1.12
753609--753650	23	1.9	21	90	9	66	35	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753611--753679	23	3.1	21	78	15	59	37	0	2	59	1.12
753652--753715	26	2.5	24	76	20	58	37	3	1	57	1.24
753923--753972	22	2.3	22	82	6	57	86	2	6	6	0.79
759189--759246	23	2.5	23	91	0	89	39	22	27	10	1.86
759328--759375	24	1.9	26	84	16	66	31	22	0	45	1.53
759541--759567	12	2.2	12	100	0	54	33	14	0	51	1.43
762937--762970	12	2.8	12	86	0	50	0	17	2	79	0.86

Tables:   1   2   3

The End!