genome.fa.s15383.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015383.1 Kokia drynarioides strain JFW-HI SEQ_130430, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  970611

Tables:   1   2   3   

This is table  2  of  3  ( 346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304563--304625	27	2.3	27	97	0	117	34	11	36	17	1.85
307942--307997	29	1.9	29	85	0	76	44	1	3	50	1.29
316489--316545	23	2.5	24	80	13	66	50	0	5	43	1.24
316495--316545	23	2.3	23	86	3	68	50	0	3	45	1.20
317072--317151	30	2.7	29	84	3	106	47	2	0	50	1.14
317821--318140	160	2.0	160	97	0	604	42	9	11	36	1.73
318423--318469	25	1.9	24	82	4	58	53	8	0	38	1.32
321564--321626	21	3.0	21	71	15	58	25	3	7	63	1.37
323256--323320	4	16.0	4	78	9	60	67	0	30	1	1.00
323260--323320	13	4.5	15	75	19	55	67	0	31	1	1.01
326697--326728	5	6.4	5	100	0	64	0	59	0	40	0.97
326988--327028	11	3.4	12	83	16	50	41	4	0	53	1.22
340657--340747	38	2.4	38	96	1	166	46	8	8	36	1.66
348697--348746	12	4.2	12	84	0	64	0	28	30	42	1.56
351977--352018	18	2.3	18	84	11	59	35	7	0	57	1.26
351979--352018	19	2.2	19	90	4	64	35	7	0	57	1.27
354310--354397	43	2.0	43	100	0	176	36	9	18	36	1.82
355255--355281	2	13.5	2	100	0	54	48	0	0	51	1.00
361913--361954	3	14.0	3	100	0	84	66	0	0	33	0.92
363342--363375	5	6.8	5	93	0	59	23	0	0	76	0.79
363340--363384	10	4.4	10	83	10	56	26	0	0	73	0.84
363335--363375	15	2.7	15	92	3	64	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365373--365426	18	2.8	19	86	5	65	62	0	0	37	0.95
365372--365425	19	2.7	21	75	13	69	64	0	0	35	0.94
365364--365500	37	3.5	39	74	13	129	62	0	2	35	1.11
365675--365739	19	3.4	19	71	14	62	27	7	3	61	1.38
365675--365739	20	3.4	19	68	21	55	27	7	3	61	1.38
365825--365858	15	2.2	16	89	5	52	20	0	0	79	0.73
368460--368497	16	2.3	17	81	9	51	78	0	0	21	0.74
368460--368498	21	1.9	20	89	5	60	79	0	0	20	0.73
382701--382743	2	21.5	2	90	9	70	48	0	2	48	1.14
389436--389465	14	2.2	14	94	5	53	30	23	10	36	1.87
393828--393870	18	2.4	17	81	11	50	46	0	2	51	1.13
407200--407406	90	2.3	90	83	5	253	38	20	8	32	1.82
407760--407902	9	15.0	9	66	22	53	31	4	2	61	1.29
407833--407905	10	7.6	10	71	11	55	30	4	0	65	1.11
407824--407905	20	4.2	20	69	20	66	32	3	0	63	1.12
407760--407876	48	2.4	49	73	10	118	30	4	3	61	1.32
407824--407922	30	3.4	30	82	10	109	33	3	0	63	1.10
408058--408103	24	2.0	23	87	12	67	58	6	15	19	1.58
409038--409101	23	2.7	23	97	2	119	14	4	10	70	1.31
419494--419643	50	2.9	50	80	6	160	36	12	14	36	1.85
419845--419877	17	1.9	17	88	11	50	66	6	0	27	1.15
422699--422772	25	3.0	25	79	0	76	29	21	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425006--425034	3	9.7	3	100	0	58	65	0	34	0	0.93
461196--461250	17	3.2	18	73	19	62	65	0	9	25	1.22
461200--461250	16	3.0	17	75	18	52	64	0	9	25	1.24
461185--461250	34	1.9	35	93	3	116	65	0	9	25	1.22
461430--461489	15	4.0	15	70	14	52	50	8	23	18	1.74
462701--462768	20	3.4	20	82	8	93	44	17	23	14	1.86
462664--462785	40	3.1	39	74	9	104	40	18	27	13	1.88
462930--463498	290	2.0	289	97	0	1066	36	17	7	38	1.77
468201--468232	16	1.9	17	93	6	57	37	21	6	34	1.79
470201--470234	3	11.3	3	100	0	68	67	0	0	32	0.91
471368--471409	8	5.2	8	80	11	50	26	0	2	71	0.98
474078--474120	20	2.2	20	88	8	63	25	0	4	69	1.07
476481--476757	87	3.2	87	84	1	358	32	24	15	27	1.95
476481--476841	175	2.1	172	78	11	362	32	23	15	28	1.95
501831--501867	6	6.3	6	87	6	58	0	18	0	81	0.70
501832--501865	11	3.0	11	91	4	50	0	14	0	85	0.60
501831--501867	17	2.1	18	90	5	58	0	18	0	81	0.70
505451--505760	30	10.5	29	75	12	161	37	2	22	37	1.68
505516--505761	30	8.3	30	77	7	196	36	2	22	38	1.67
505452--505760	59	5.2	57	73	11	198	37	2	22	36	1.69
506365--506439	33	2.2	33	81	13	91	16	10	10	62	1.53
507901--508581	50	13.8	50	78	2	570	18	31	16	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507956--508530	99	5.8	99	81	1	593	17	31	17	33	1.93
507923--508584	149	4.5	148	83	2	695	19	30	16	33	1.93
511058--511108	12	4.2	12	80	9	50	5	7	0	86	0.71
511057--511111	21	2.6	21	82	5	67	5	10	0	83	0.79
516499--516633	59	2.3	58	81	5	146	40	2	22	34	1.67
516499--516716	30	7.4	29	79	6	163	35	1	26	36	1.67
526884--526923	21	1.9	21	85	10	55	30	10	7	52	1.62
527747--527784	15	2.4	16	86	4	51	34	2	2	60	1.24
528000--528024	11	2.3	11	100	0	50	24	0	0	76	0.80
528440--528484	10	4.7	10	79	15	51	24	2	0	73	0.95
528446--528484	15	2.6	14	84	11	51	23	2	0	74	0.94
529237--529310	38	1.9	38	88	0	112	27	2	8	62	1.37
529237--529310	34	2.1	36	85	10	98	27	2	8	62	1.37
529488--529522	18	1.9	18	88	11	54	28	0	2	68	1.04
530431--530481	5	9.4	5	89	6	57	72	0	9	17	1.11
530434--530537	6	18.7	6	77	20	77	75	0	11	12	1.04
530434--530486	11	4.8	11	88	6	63	73	0	11	15	1.09
530434--530533	17	6.3	17	73	19	74	75	0	12	13	1.06
530478--530502	11	2.3	11	100	0	50	92	0	8	0	0.40
530455--530532	17	5.1	16	75	21	78	75	0	14	10	1.04
533396--533433	14	2.8	13	81	18	51	73	0	2	23	0.95
533397--533441	13	3.3	13	84	15	56	71	0	4	24	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534484--534529	25	1.9	23	86	8	65	56	4	4	34	1.39
535025--535084	29	2.0	30	84	9	79	33	0	13	53	1.40
547933--547983	12	4.1	12	72	18	50	49	1	1	47	1.24
547936--547977	21	2.0	21	85	0	57	52	2	2	42	1.27
548090--548144	26	2.2	24	81	12	65	54	3	3	38	1.36
548053--548144	37	2.4	38	78	12	100	53	4	3	39	1.37
550434--550489	25	2.3	24	87	3	76	50	1	1	46	1.22
550524--550622	20	5.3	18	69	19	62	52	3	2	42	1.28
552055--552087	11	2.8	12	86	4	50	51	12	3	33	1.54
554251--554348	28	3.5	27	79	8	81	34	26	12	26	1.92
558629--558671	21	2.0	21	86	8	61	13	46	23	16	1.83
563463--563514	15	3.5	15	87	7	79	21	17	5	55	1.62
563709--563749	3	13.7	3	85	10	57	29	2	0	68	1.03
563708--563781	18	4.2	17	75	14	69	28	5	0	66	1.14
574563--574610	6	7.8	6	82	17	55	79	0	20	0	0.74
574563--574610	11	4.5	11	81	5	62	79	0	20	0	0.74
574562--574601	21	1.9	21	94	0	71	75	0	25	0	0.81
580577--580619	22	2.0	22	81	9	52	34	0	13	51	1.42
582162--582200	20	2.0	20	100	0	78	30	12	15	41	1.85
583478--583541	32	2.0	32	96	0	119	25	14	32	28	1.94
587124--587175	18	2.8	18	77	11	52	26	9	1	61	1.38
590533--590572	21	1.9	21	84	0	53	50	22	15	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611372--611434	26	2.4	26	86	0	90	23	25	25	25	2.00
622810--622853	22	2.0	22	86	0	61	40	0	6	52	1.28
623413--623456	19	2.3	19	88	0	61	13	40	27	18	1.88
623451--623475	6	4.2	6	100	0	50	20	48	16	16	1.82
624010--624138	68	1.9	68	81	9	156	35	10	13	41	1.78
624415--624516	46	2.2	45	79	5	114	34	7	26	31	1.85
625420--625513	19	4.9	19	88	0	134	29	5	26	38	1.78
625420--625494	11	7.7	10	70	25	54	30	5	28	36	1.79
626221--626266	14	3.4	13	85	8	56	4	0	28	67	1.10
630423--630465	19	2.4	19	84	7	54	16	18	23	41	1.89

Tables:   1   2   3