genome.fa.s9759.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009759.1 Kokia drynarioides strain JFW-HI SEQ_124478, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  528391

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1420--1473	15	3.6	15	72	22	51	37	3	1	57	1.27
1432--1482	12	3.8	13	73	16	50	35	1	1	60	1.19
3781--3821	20	2.0	20	85	0	55	41	14	0	43	1.45
3767--3849	29	2.8	31	75	15	77	48	10	1	39	1.46
4221--4247	5	5.4	5	100	0	54	37	0	0	62	0.95
6676--6730	14	3.8	15	77	15	62	41	5	0	52	1.24
21031--21195	59	2.8	59	84	2	208	24	16	10	47	1.79
21417--21491	28	2.6	28	79	8	71	54	9	10	25	1.64
25256--25291	18	2.0	18	89	10	56	63	2	0	33	1.08
28831--28870	7	5.6	7	88	5	62	82	0	0	17	0.67
31026--31113	37	2.4	39	81	7	94	44	2	5	47	1.39
31195--31248	16	3.6	14	79	16	54	35	3	3	57	1.34
33309--33348	20	2.2	18	86	13	55	62	12	0	25	1.30
33309--33349	18	2.2	19	86	8	57	63	12	0	24	1.28
37714--38182	196	2.4	192	82	6	530	42	18	7	30	1.78
48331--48364	11	2.8	13	82	17	54	70	0	5	23	1.09
48710--48759	16	3.2	16	71	21	52	60	6	0	34	1.21
48719--48834	58	2.0	59	96	1	216	53	10	1	34	1.45
48710--48807	30	3.3	30	70	16	105	56	8	1	34	1.36
58211--58278	31	2.2	31	83	0	91	22	19	23	35	1.96
62525--62571	24	2.0	23	91	4	76	48	4	0	46	1.21
64327--64644	157	2.0	158	85	5	430	28	13	21	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67541--67637	17	5.7	18	70	22	59	52	3	2	42	1.28
69531--69561	16	1.9	16	93	0	53	48	6	6	38	1.55
70272--70443	54	3.2	53	69	11	127	29	23	15	31	1.95
70291--70485	108	1.8	108	80	6	234	29	24	16	29	1.96
72023--72047	3	8.3	3	100	0	50	68	32	0	0	0.90
74029--74072	20	2.2	20	84	12	54	81	2	6	9	0.94
76483--76545	20	3.1	21	77	4	58	57	6	3	33	1.40
76646--76690	2	22.5	2	100	0	90	51	0	0	48	1.00
89926--89966	19	2.2	19	86	4	57	46	0	0	53	1.00
90002--90028	2	13.5	2	100	0	54	51	0	0	48	1.00
91006--91482	240	2.0	242	82	7	578	20	13	12	53	1.71
95253--95294	21	2.0	21	85	0	57	47	0	7	45	1.30
97344--98322	104	9.3	104	69	10	579	29	13	16	39	1.87
97382--98432	212	5.0	212	91	1	1529	29	13	16	40	1.87
97409--98475	108	10.0	107	68	11	381	29	14	16	40	1.87
100306--100367	30	2.0	31	84	9	83	38	16	14	30	1.88
101473--101497	4	6.2	4	100	0	50	28	0	24	48	1.52
106387--106459	39	1.9	37	91	5	119	38	4	4	53	1.39
117122--117146	3	8.3	3	100	0	50	68	0	0	32	0.90
120445--120492	11	4.4	11	78	0	51	70	8	2	18	1.22
120453--120518	22	3.0	22	81	0	69	59	13	10	16	1.61
121895--121925	16	1.9	16	93	0	53	45	3	0	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133624--133669	22	2.0	23	88	12	69	36	0	0	63	0.95
135119--135163	4	11.2	4	90	0	63	26	0	26	46	1.53
145694--145739	22	2.0	23	87	4	67	23	2	10	63	1.38
156747--156771	2	12.5	2	100	0	50	52	0	48	0	1.00
160376--160428	17	3.1	16	81	8	61	50	0	5	43	1.25
164317--164383	29	2.3	31	79	7	77	26	10	8	53	1.64
164536--164573	20	1.9	20	88	0	58	50	5	7	36	1.54
165583--165618	4	9.0	4	93	0	54	25	5	25	44	1.75
171218--171259	16	2.7	16	74	3	50	52	9	9	28	1.65
171488--171607	11	11.5	10	68	17	66	32	0	3	64	1.10
171487--171609	20	5.9	21	70	19	80	32	0	3	64	1.10
184988--185163	94	1.9	93	92	1	298	28	11	19	40	1.87
187354--187393	21	1.9	21	85	10	55	42	35	17	5	1.71
195511--195583	29	2.5	30	77	4	85	34	4	9	52	1.53
201327--201421	49	1.9	49	86	0	136	53	13	11	21	1.71
215428--215462	18	2.0	17	88	5	52	42	0	2	54	1.15
218948--219486	170	3.2	171	90	3	822	38	20	7	33	1.80
230541--230573	17	1.9	17	93	0	57	33	0	0	66	0.92
246998--247262	29	9.0	28	75	16	216	32	4	28	33	1.78
246998--247266	59	4.6	58	83	5	319	32	4	29	33	1.78
246999--247266	118	2.3	118	85	3	353	32	4	29	33	1.78
248964--249018	28	2.0	28	88	0	83	56	1	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248985--249017	17	1.9	17	93	0	57	54	3	0	42	1.15
249163--249202	6	6.8	6	97	2	73	35	65	0	0	0.93
250750--251280	293	1.8	293	85	2	744	38	14	16	29	1.89
265583--265617	2	17.5	2	93	0	61	48	0	2	48	1.16
270398--270434	9	3.9	9	92	7	56	54	0	2	43	1.14
271519--271564	22	2.1	22	100	0	92	50	28	8	13	1.70
274834--275139	159	1.9	160	95	2	553	47	21	6	24	1.74
275023--275242	113	2.0	110	87	2	314	45	19	9	26	1.81
276510--276538	12	2.5	12	94	5	51	13	0	0	86	0.58
283813--283885	38	1.9	38	88	5	112	28	10	21	38	1.88
285990--286358	93	4.0	93	83	4	433	34	12	19	33	1.89
290450--290495	22	2.0	24	87	8	69	39	0	0	60	0.97
291032--291070	4	9.8	4	94	0	69	25	2	0	71	0.98
291459--291503	23	2.0	23	83	12	58	53	0	6	40	1.27
294819--294861	22	2.0	22	90	0	68	25	9	4	60	1.47
302138--302279	51	2.7	51	86	2	194	38	8	16	36	1.80
307834--307880	21	2.1	23	84	7	62	72	4	4	19	1.18
317121--317154	2	17.0	2	93	0	59	52	0	0	47	1.00
320203--320289	33	2.6	32	78	12	86	22	6	31	39	1.81
320724--320765	21	2.0	21	95	4	77	42	4	4	47	1.45
322187--322229	18	2.4	18	100	0	86	37	32	13	16	1.88
352317--352364	23	2.1	23	100	0	96	37	25	0	37	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355016--355050	2	17.5	2	100	0	70	51	0	0	48	1.00
357749--357819	30	2.4	30	76	9	72	52	7	2	38	1.44
357802--357849	25	2.0	24	83	4	60	68	0	6	25	1.12
362448--362560	57	2.0	56	96	1	208	27	22	14	36	1.92
364214--364311	31	3.2	31	70	8	83	45	17	16	20	1.85
366374--367254	394	2.4	358	80	10	934	36	23	7	32	1.83
369092--369155	29	2.2	29	86	8	85	39	6	14	40	1.71
369511--369545	2	17.5	2	100	0	70	0	48	0	51	1.00
369717--370633	187	4.9	187	80	6	929	23	13	25	38	1.91
370507--370835	165	2.0	161	82	6	396	26	15	21	36	1.93
375777--375801	12	2.1	12	100	0	50	0	12	0	88	0.53
378958--378987	16	1.9	16	93	6	53	30	13	6	50	1.67
379751--379830	29	2.7	31	81	7	87	50	0	2	47	1.14
379751--379810	28	2.1	29	84	3	77	50	0	3	46	1.18
380549--380583	17	2.1	17	100	0	70	42	5	5	45	1.51
385227--385292	29	2.4	27	80	16	73	33	12	4	50	1.60
387652--387703	16	3.2	16	74	15	52	42	25	11	21	1.86
393267--393319	21	2.7	20	77	8	54	69	9	11	9	1.36
393565--393589	3	8.3	3	100	0	50	64	0	36	0	0.94
400038--400080	18	2.3	19	88	4	61	37	0	0	62	0.95
400683--400721	19	2.0	20	85	5	53	10	0	12	76	1.01
400683--400721	20	2.0	20	85	10	53	10	0	12	76	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400799--400834	18	2.0	18	88	0	54	41	0	5	52	1.24
400967--401002	6	5.8	6	87	6	54	83	0	0	16	0.65
406470--406538	31	2.3	29	80	5	75	53	10	13	23	1.69
409586--409638	23	2.3	23	83	6	72	35	5	0	58	1.22
426360--426426	31	2.2	31	83	0	89	37	17	13	31	1.89
432769--432829	26	2.4	26	84	13	74	32	24	0	42	1.55
433384--433449	16	4.1	16	78	2	51	51	6	6	36	1.51
434753--434831	30	2.6	31	86	9	103	46	10	8	34	1.69
449020--449067	24	2.0	24	87	4	69	50	0	0	50	1.00
457235--457290	3	18.7	3	100	0	112	32	0	0	67	0.91

Tables:   1   2