genome.fa.s101.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold101
Parameters: 2 7 7 80 10 50 1000
Length:  827217

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 650 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741942--742014	35	2.1	36	97	2	139	21	8	20	49	1.75
747128--747168	2	20.5	2	100	0	82	48	0	0	51	1.00
751792--751835	19	2.4	19	84	3	63	54	0	0	45	0.99
753637--753677	19	2.2	19	95	0	73	60	2	4	31	1.30
763031--763063	13	2.4	14	85	10	50	63	0	0	36	0.95
763011--763090	38	2.1	37	84	6	99	58	0	0	41	0.98
768537--768591	28	1.9	29	85	3	76	49	1	1	47	1.23
768536--768591	29	2.0	28	86	6	78	48	1	1	48	1.22
769903--769997	23	4.0	23	78	6	93	65	1	6	27	1.23
770149--770196	17	2.8	17	87	6	71	2	16	0	81	0.79
770151--770198	15	3.1	16	82	11	64	2	18	0	79	0.84
773573--773605	3	11.0	3	100	0	66	33	0	0	66	0.92
773715--773741	2	13.5	2	100	0	54	51	0	0	48	1.00
775381--775424	22	2.0	22	91	8	72	43	11	9	36	1.72
775490--775527	19	2.0	19	94	0	67	15	7	26	50	1.72
776454--776494	15	2.9	14	85	7	64	48	14	7	29	1.71
781284--781342	16	3.8	16	69	13	50	54	0	1	44	1.10
781204--781353	31	4.4	32	73	16	115	56	2	2	39	1.25
781287--781336	17	3.1	17	72	16	52	54	0	2	44	1.11
781204--781351	35	4.2	37	67	19	109	55	2	2	39	1.26
782038--782122	32	2.7	32	94	0	143	34	11	17	36	1.86
782055--782114	19	3.5	18	70	25	58	35	11	16	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786869--786935	33	2.0	33	88	0	98	34	11	13	40	1.81
786889--786913	13	1.9	13	100	0	50	36	16	16	32	1.90
786976--787000	13	1.9	13	100	0	50	32	16	16	36	1.90
787009--787136	52	2.5	52	93	3	215	32	18	17	30	1.95
790358--790400	21	2.0	21	100	0	86	27	23	20	27	1.99
795313--795453	31	4.6	32	84	7	168	24	29	19	26	1.99
795443--795974	34	16.5	32	81	12	481	20	34	13	31	1.91
795976--796089	33	3.5	32	86	8	160	28	36	16	17	1.92
796082--797408	189	6.9	192	86	5	1744	25	26	18	29	1.98
796082--797408	238	5.6	238	96	1	2319	25	26	18	29	1.98
796082--797408	287	4.6	286	87	5	1804	25	26	18	29	1.98
797227--797364	43	3.1	43	91	5	204	26	26	18	28	1.98
797318--797456	52	2.6	52	82	4	161	25	25	15	33	1.95
798286--798352	33	2.0	33	88	0	98	34	11	13	40	1.81
798306--798330	13	1.9	13	100	0	50	36	16	16	32	1.90
798369--798427	21	2.8	21	100	0	118	38	16	10	33	1.83
798414--798438	13	1.9	13	100	0	50	32	16	16	36	1.90
798447--798574	52	2.5	52	93	3	215	32	18	17	30	1.95
803138--803179	22	1.9	22	90	0	66	45	0	4	50	1.23
805376--805400	1	25.0	1	100	0	50	0	0	100	0	0.00
807960--808123	50	3.3	50	93	0	292	42	14	27	15	1.86
809658--809781	53	2.4	50	82	12	144	29	25	13	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
809712--810017	78	3.9	79	90	1	447	27	25	14	32	1.95
823501--824070	62	9.4	61	84	6	666	25	29	19	25	1.99
823524--824067	122	4.4	122	86	4	731	25	29	19	25	1.98
823524--824067	244	2.2	245	90	2	851	25	29	19	25	1.98
824913--825075	50	3.3	50	92	0	283	42	14	27	15	1.86
826706--827018	82	3.9	77	76	16	228	29	22	16	31	1.96

Tables:   1   2   3   4   5   6

The End!