genome.fa.s105.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold105
Parameters: 2 7 7 80 10 50 1000
Length:  2918491

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1849 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2777242--2777489	87	2.9	86	97	1	460	35	17	16	30	1.92
2779307--2779495	102	1.9	102	86	4	274	42	17	13	25	1.86
2783182--2783236	27	2.0	27	100	0	110	32	32	7	27	1.84
2785351--2785403	25	2.1	25	100	0	106	54	3	24	16	1.59
2785483--2785567	27	3.1	27	96	0	152	42	8	12	36	1.73
2786669--2786698	2	15.0	2	92	0	51	50	3	0	46	1.18
2786933--2787002	34	2.1	34	94	0	122	35	17	8	38	1.80
2787534--2787570	2	18.5	2	100	0	74	51	0	0	48	1.00
2801332--2802028	228	3.0	230	90	3	1060	38	22	13	25	1.91
2809595--2809619	12	2.1	12	100	0	50	36	16	8	40	1.77
2810716--2810761	22	2.1	22	83	0	56	56	0	2	41	1.11
2810740--2810795	29	1.9	29	89	7	87	57	1	5	35	1.32
2846304--2846328	12	2.1	12	100	0	50	36	16	8	40	1.77
2847648--2847699	24	2.1	26	82	10	65	57	1	1	38	1.21
2848466--2848520	28	2.0	28	89	7	85	61	0	5	32	1.19
2848798--2848840	20	2.2	20	100	0	86	44	20	4	30	1.72
2849808--2849881	28	2.7	27	77	8	69	28	17	35	18	1.94
2849874--2850046	52	3.3	52	77	6	163	32	11	24	31	1.91
2849976--2850093	51	2.3	51	84	5	141	33	13	24	28	1.93
2852605--2852671	33	2.0	33	85	0	89	44	16	13	25	1.84
2853460--2854118	55	11.3	60	85	7	733	24	19	28	26	1.99
2855087--2855148	14	4.4	14	74	11	56	0	9	6	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2861600--2861649	2	25.0	2	95	0	91	48	0	2	50	1.12
2862746--2862817	35	2.1	35	94	0	126	52	15	22	9	1.71
2863098--2863122	6	4.2	6	100	0	50	36	16	16	32	1.90
2865982--2866116	67	2.0	67	95	0	243	42	19	13	24	1.87
2868426--2868462	2	18.5	2	100	0	74	0	0	51	48	1.00
2868960--2869094	67	2.0	67	98	0	261	42	19	14	23	1.87
2871148--2871204	27	2.1	27	96	0	105	43	10	10	35	1.74
2871972--2872007	13	2.6	14	86	4	56	38	33	8	19	1.82
2876219--2876247	2	15.0	2	92	7	51	51	0	0	48	1.00
2878154--2878288	67	2.0	67	100	0	270	42	19	14	23	1.88
2878893--2878952	23	2.6	23	89	5	95	65	3	18	13	1.40
2880220--2880277	27	2.1	27	96	0	107	43	10	10	36	1.73
2881118--2881164	13	3.5	13	83	11	51	38	40	2	19	1.63
2881240--2881275	3	12.7	3	88	11	58	36	0	0	63	0.94
2884834--2885524	227	3.0	230	89	3	1039	39	21	13	25	1.90
2891114--2891139	2	13.0	2	100	0	52	50	50	0	0	1.00
2893497--2893529	2	17.0	2	93	6	59	51	0	0	48	1.00
2894993--2895034	18	2.3	19	87	4	59	61	11	11	14	1.56
2895788--2896487	232	3.0	229	89	4	1026	39	21	13	25	1.90
2904046--2904072	12	2.2	12	100	0	54	40	14	7	37	1.74
2904256--2904301	3	15.3	3	100	0	92	67	0	0	32	0.91
2905200--2905246	17	2.8	17	80	6	60	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2905287--2905355	29	2.3	29	85	7	86	50	1	2	44	1.25
2905423--2905543	28	4.3	28	67	22	92	42	0	9	47	1.41
2905818--2905851	3	11.3	3	93	0	59	35	0	0	64	0.94
2905824--2905867	15	2.9	16	86	6	56	29	6	0	63	1.20
2906110--2906503	129	2.8	140	80	13	492	46	14	12	25	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!