genome.fa.s105.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold105
Parameters: 2 7 7 80 10 50 1000
Length:  2918491

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  5  of  16  ( 1849 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690394--690430	18	2.1	18	90	10	58	40	0	0	59	0.97
691142--691191	20	2.5	19	84	15	66	56	2	8	34	1.40
691387--691433	13	3.6	13	82	5	51	53	0	0	46	1.00
691995--692024	2	15.0	2	100	0	60	50	0	0	50	1.00
692590--692630	21	2.1	19	90	9	64	48	0	0	51	1.00
694514--694575	31	2.0	31	93	3	108	29	9	16	45	1.79
694670--694694	3	8.3	3	100	0	50	64	0	0	36	0.94
697841--697866	2	13.0	2	100	0	52	50	0	0	50	1.00
703018--703270	84	3.0	84	85	7	295	33	21	21	23	1.97
709852--709880	2	14.5	2	100	0	58	51	0	0	48	1.00
710801--710864	30	2.1	31	82	8	78	45	1	1	51	1.20
711423--711448	3	8.7	3	100	0	52	34	30	0	34	1.58
715808--715859	26	2.0	25	82	14	61	46	1	3	48	1.31
718657--718691	15	2.3	15	95	0	61	45	0	0	54	0.99
723328--723367	2	20.5	2	92	5	64	52	0	0	47	1.00
723524--723592	25	2.8	25	82	8	70	34	0	1	63	1.03
724587--724667	36	2.1	36	82	8	90	56	2	1	39	1.20
725581--725619	19	2.1	19	90	4	62	38	2	2	56	1.27
725672--725713	9	4.3	10	85	14	61	28	0	0	71	0.86
725672--725713	20	2.2	19	91	4	66	28	0	0	71	0.86
726206--726268	32	1.9	33	81	9	76	63	1	0	34	1.04
726592--726649	28	2.0	29	86	3	82	39	8	0	51	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726640--726682	7	6.3	7	91	5	61	32	0	0	67	0.91
726641--726682	20	2.1	20	90	0	66	33	0	0	66	0.92
726771--726795	2	12.5	2	100	0	50	48	0	0	52	1.00
727335--727413	12	6.5	13	66	28	50	41	0	0	58	0.98
727335--727403	26	2.7	24	82	13	68	42	0	0	57	0.98
727504--727553	20	2.5	21	83	9	68	58	0	0	42	0.98
727512--727557	20	2.4	19	92	3	74	50	0	0	50	1.00
728873--728907	3	11.7	3	100	0	70	68	0	0	31	0.90
729574--729603	2	15.0	2	92	0	51	46	0	3	50	1.18
730605--730643	19	2.2	17	90	9	60	25	0	0	74	0.82
731611--731648	15	2.4	16	86	4	51	57	2	0	39	1.12
732174--732206	16	2.1	16	88	11	50	42	6	0	51	1.26
733591--733711	62	2.0	62	93	6	210	32	9	14	42	1.79
734722--734796	29	2.7	26	74	20	71	50	1	0	48	1.09
735543--735587	23	2.0	21	87	12	63	40	0	11	48	1.39
735548--735603	25	2.3	24	82	14	71	39	0	5	55	1.23
736583--736643	27	2.3	26	83	11	70	47	0	4	47	1.23
736599--736655	26	2.2	26	82	14	66	50	0	1	47	1.11
738989--739028	3	13.3	3	86	0	53	2	35	2	60	1.24
742305--742331	2	13.5	2	100	0	54	51	0	0	48	1.00
742615--742660	20	2.2	22	88	11	71	47	0	4	47	1.21
746213--746310	38	2.6	38	78	4	108	45	3	6	44	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
750767--750844	38	2.1	38	100	0	156	50	26	5	17	1.67
752163--752213	26	1.9	27	88	4	77	56	0	0	43	0.99
752373--752469	32	3.0	31	72	19	83	44	1	2	52	1.19
753820--753858	16	2.5	15	88	8	60	46	0	0	53	1.00
755059--755089	10	3.0	10	95	4	53	51	0	0	48	1.00
755060--755093	10	3.3	10	88	8	50	55	0	0	44	0.99
755615--755673	24	2.5	23	81	13	68	64	0	0	35	0.94
759785--759829	2	22.5	2	100	0	90	0	51	0	48	1.00
761353--761383	2	15.5	2	100	0	62	51	0	48	0	1.00
765842--765887	3	15.3	3	90	0	74	36	0	0	63	0.95
766094--766171	24	3.3	22	72	12	66	56	1	0	42	1.07
766814--766843	15	2.0	15	93	0	51	66	6	23	3	1.30
783719--783764	23	2.0	23	82	4	56	34	2	8	54	1.43
783763--783798	17	2.0	19	89	10	58	47	0	0	52	1.00
783769--783807	19	2.1	18	85	4	51	51	0	0	48	1.00
784364--784397	2	17.5	2	93	6	61	50	0	0	50	1.00
785820--785912	30	3.0	33	72	24	85	46	0	1	52	1.07
786173--786201	2	14.5	2	100	0	58	48	0	0	51	1.00
786208--786311	45	2.3	45	83	8	131	54	0	0	45	0.99
786767--786825	21	2.7	22	76	5	66	64	10	0	25	1.25
786848--786886	20	1.9	20	84	5	51	23	10	10	56	1.63
791148--791198	15	3.5	14	76	10	57	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
791511--791547	17	2.1	19	85	10	51	70	2	10	16	1.27
796008--796040	2	16.5	2	100	0	66	51	0	0	48	1.00
798166--798194	14	2.1	14	93	6	51	41	0	0	58	0.98
798674--798698	11	2.3	11	100	0	50	28	20	8	44	1.79
798834--798887	18	2.8	18	73	13	54	37	0	0	62	0.95
799794--799833	3	13.3	3	100	0	80	67	0	0	32	0.91
799982--800027	3	15.3	3	95	0	83	65	0	2	32	1.05
800426--800471	14	3.1	14	87	9	56	28	2	0	69	1.00
801849--801895	24	2.0	23	87	4	67	46	0	0	53	1.00
802085--802116	5	6.4	5	100	0	64	0	59	0	40	0.97
805222--805362	45	3.1	44	75	13	119	31	12	25	29	1.93
808477--808516	12	3.2	13	86	10	57	67	0	0	32	0.91
808453--808498	17	2.8	17	75	15	51	65	0	0	34	0.93
808432--808514	34	2.5	31	79	11	85	62	0	0	37	0.95
808426--808518	30	3.3	30	67	18	74	62	0	0	37	0.96
808547--808613	23	3.0	23	68	16	59	58	0	1	40	1.07
809407--809450	21	2.2	20	84	12	54	22	6	2	68	1.25
809641--809789	30	5.0	29	76	11	133	53	2	4	39	1.33
811304--811352	16	3.2	16	75	13	59	32	0	0	67	0.91
811301--811359	24	2.3	24	85	8	73	33	0	1	64	1.04
812258--812632	186	2.0	185	83	5	459	43	10	6	38	1.67
814888--814915	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
815938--816043	54	2.0	54	96	0	194	20	13	23	42	1.87
825612--825636	2	12.5	2	100	0	50	52	0	0	48	1.00
830016--830053	20	1.9	20	89	10	60	63	0	0	36	0.95
830099--830131	12	2.7	13	90	9	52	60	0	0	39	0.97
837022--837055	2	17.0	2	93	0	59	50	0	2	47	1.16
837436--837498	17	3.8	17	76	18	69	47	1	0	50	1.10
840261--840300	17	2.3	18	91	4	64	45	0	0	55	0.99
846566--846628	29	2.2	29	85	0	81	42	11	1	44	1.49
846655--846738	32	2.6	32	92	0	141	52	2	1	44	1.21
846666--846712	21	2.0	25	84	15	66	55	0	0	44	0.99
846663--846720	16	3.6	16	70	9	55	56	0	0	43	0.99
846671--846719	22	2.2	23	82	10	57	59	0	0	40	0.98
847950--847991	17	2.6	16	85	7	59	57	0	0	42	0.99
847967--848033	29	2.4	28	82	7	73	47	1	2	47	1.26
848587--848685	42	2.4	42	86	3	128	35	5	6	53	1.48
849047--849084	13	2.8	14	84	4	51	31	2	0	65	1.06
849087--849162	11	6.7	12	71	17	63	35	1	1	61	1.12
849068--849162	45	2.1	43	81	7	109	33	1	1	64	1.08
849293--849322	7	4.3	7	100	0	60	16	0	0	83	0.65
849672--849712	18	2.4	17	83	4	55	39	0	2	58	1.11
850191--850247	9	6.1	9	73	15	53	40	1	3	54	1.28
850224--850254	14	2.2	14	94	0	53	29	0	3	67	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850222--850281	20	3.0	20	87	2	77	28	1	1	68	1.09
854120--854157	2	19.0	2	100	0	76	50	0	50	0	1.00
856204--856242	16	2.5	16	83	4	53	30	0	0	69	0.89
856785--856809	2	12.5	2	100	0	50	48	0	0	52	1.00
858470--858504	3	11.7	3	100	0	70	68	0	0	31	0.90
862944--863004	20	3.0	20	75	15	61	59	1	0	39	1.08
862946--862990	22	2.0	23	87	12	67	55	0	0	44	0.99
869025--869082	30	1.9	31	89	3	91	37	10	15	36	1.82
870013--870047	8	4.4	8	88	0	52	60	0	2	37	1.12
870793--870836	21	2.0	22	86	4	63	68	0	0	31	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16