genome.fa.s1092.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1092
Parameters: 2 7 7 80 10 50 1000
Length:  788722

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721710--721775	33	2.0	33	85	5	89	30	13	13	42	1.83
722568--722593	13	2.0	13	100	0	52	30	15	15	38	1.88
723288--723349	21	3.0	21	90	4	90	30	32	4	32	1.79
723325--723381	29	2.0	29	96	0	105	31	26	7	35	1.83
725174--725212	13	3.0	13	96	0	69	35	15	17	30	1.91
725198--725276	20	3.7	20	75	15	68	45	15	13	25	1.83
727291--727321	15	2.1	15	93	0	53	12	22	16	48	1.80
729125--729169	21	2.1	21	84	8	56	22	20	4	53	1.63
731396--731421	13	2.0	13	100	0	52	30	15	15	38	1.88
734107--734165	19	3.4	19	73	26	76	33	13	18	33	1.90
734122--734179	13	4.0	13	74	23	53	34	15	17	32	1.91
734107--734178	32	2.2	32	97	0	135	33	15	18	33	1.92
734197--734262	33	2.0	33	85	5	89	30	13	13	42	1.83
735055--735080	13	2.0	13	100	0	52	30	15	15	38	1.88
739787--739833	20	2.3	20	81	3	58	42	12	14	29	1.83
739799--739838	20	2.0	20	85	0	53	42	12	15	30	1.83
739897--739951	21	2.6	21	94	0	92	30	16	16	36	1.91
740429--740459	14	2.2	14	100	0	62	19	19	6	54	1.65
740915--740953	21	1.9	21	94	5	71	15	23	17	43	1.87
744153--744216	25	2.6	24	87	7	92	82	0	17	0	0.66
744164--744216	21	2.6	21	83	13	67	84	0	15	0	0.61
744164--744195	15	2.1	15	100	0	64	87	0	12	0	0.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747735--747828	29	3.2	29	64	18	77	45	10	10	32	1.73
748983--749008	13	2.0	13	100	0	52	30	15	15	38	1.88
748963--749030	33	2.1	33	89	8	104	35	14	16	33	1.89
755177--755202	13	2.0	13	100	0	52	38	15	15	30	1.88
758156--758181	13	2.0	13	100	0	52	30	15	15	38	1.88
758136--758199	32	2.0	33	90	3	103	28	14	15	42	1.86
758840--758875	18	2.0	18	100	0	72	38	16	5	38	1.72
758913--758961	20	2.5	20	100	0	98	22	34	0	42	1.54
760774--760812	13	3.0	13	88	0	60	30	17	17	33	1.94
762893--762923	15	2.1	15	93	0	53	12	22	16	48	1.80
766993--767018	13	2.0	13	100	0	52	30	15	15	38	1.88
766973--767036	32	2.0	33	90	3	103	28	14	15	42	1.86
767722--767746	13	1.9	13	100	0	50	32	16	16	36	1.90
767835--767860	13	2.0	13	100	0	52	30	15	15	38	1.88
767815--767882	33	2.1	32	91	8	111	35	14	17	32	1.91
772873--772998	52	2.4	52	95	0	225	26	18	18	36	1.94
773007--773031	13	1.9	13	100	0	50	36	16	16	32	1.90
774206--774244	20	1.9	21	94	5	71	35	10	10	43	1.73
774299--774324	13	2.0	13	100	0	52	30	15	15	38	1.88
774279--774342	32	2.0	33	90	3	103	28	14	18	39	1.90
774279--774349	19	4.0	18	72	25	62	26	12	21	39	1.89
778968--778998	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
780801--780845	21	2.1	21	84	8	56	22	20	4	53	1.63
783587--783615	13	2.2	13	100	0	58	27	13	17	41	1.87
785314--785504	77	2.5	77	96	0	346	42	5	16	35	1.70
786038--786064	13	2.1	13	100	0	54	29	14	14	40	1.86
786134--786196	33	1.9	33	86	0	90	31	11	20	36	1.88

Tables:   1   2   3   4   5

The End!