genome.fa.s110.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold110
Parameters: 2 7 7 80 10 50 1000
Length:  1159294

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 712 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913407--913516	42	2.6	42	89	0	166	45	0	42	11	1.41
913416--913507	24	4.2	23	74	20	81	44	0	42	13	1.43
926088--926173	24	3.8	24	75	17	94	41	3	45	9	1.53
926112--926182	18	3.6	18	72	20	61	43	4	43	8	1.54
926079--926197	42	2.8	42	92	0	193	42	3	46	7	1.48
940612--940730	42	2.8	42	92	0	193	8	46	2	42	1.47
940645--940720	12	6.9	11	75	15	52	9	48	2	39	1.49
940636--940721	24	3.8	24	72	17	85	10	45	2	41	1.51
940627--940697	18	3.6	18	69	20	52	9	43	2	43	1.52
956022--956140	42	2.8	42	92	0	193	8	46	2	42	1.47
956055--956130	12	6.9	11	75	15	52	9	48	2	39	1.49
956046--956131	24	3.8	24	72	17	85	10	45	2	41	1.51
956037--956107	18	3.6	18	69	20	52	9	43	2	43	1.52
959382--959457	12	6.9	11	75	15	52	39	2	48	9	1.49
959381--959466	24	3.8	24	72	17	85	41	2	45	10	1.51
959372--959490	42	2.8	42	92	0	193	42	2	46	8	1.47
970379--970456	24	3.5	24	70	20	78	39	2	44	12	1.56
970371--970477	42	2.5	42	89	0	160	40	2	45	11	1.54
983231--983671	223	2.0	219	89	3	679	28	17	21	31	1.97
988951--989011	9	7.1	9	78	10	74	13	42	0	44	1.43
988938--989008	18	3.6	18	72	20	61	12	42	0	45	1.42
988922--989030	42	2.6	42	89	0	155	12	43	0	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988946--989030	24	3.8	24	74	17	83	14	41	0	44	1.45
994011--994214	79	2.6	79	83	1	230	29	17	29	24	1.97
994169--994240	28	2.6	28	88	0	99	23	19	34	22	1.96
994228--994449	52	4.3	51	77	5	203	31	13	25	29	1.93
994381--994531	82	1.9	79	84	4	203	29	14	27	28	1.95
994464--994594	51	2.5	51	82	9	165	32	10	25	31	1.90
994329--994582	133	1.9	131	84	4	332	31	13	25	29	1.94
996935--997001	33	2.0	33	85	0	89	43	14	14	26	1.85
997021--997088	19	3.9	18	76	23	83	38	14	11	35	1.83
997043--997067	13	1.9	13	100	0	50	32	16	16	36	1.90
997024--997086	32	2.0	32	96	0	117	36	15	12	34	1.86
997123--997199	21	3.7	21	85	3	102	35	15	12	36	1.86
997904--999014	55	19.3	59	85	6	1196	25	20	28	25	1.99
997904--999022	234	4.9	229	85	7	1291	25	20	28	25	1.99
1000015--1000053	11	3.8	10	83	16	53	0	2	12	84	0.72
1000001--1000032	13	2.4	13	94	5	55	0	3	12	84	0.74
1008317--1008377	9	7.1	9	72	10	56	11	44	1	42	1.50
1008322--1008356	12	2.9	12	84	16	54	11	48	0	40	1.39
1008289--1008407	42	2.8	42	90	0	175	9	45	1	43	1.46
1008313--1008398	24	3.8	24	73	17	85	11	45	1	41	1.48
1013954--1014061	21	5.3	18	66	30	58	10	48	1	39	1.48
1013957--1014075	42	2.8	42	93	0	202	9	46	1	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013990--1014065	12	6.9	11	75	15	52	9	48	2	39	1.49
1014994--1016418	728	2.0	729	96	0	2609	34	22	15	27	1.94
1020662--1020777	42	2.8	42	87	0	160	11	42	0	45	1.45
1020716--1020747	9	3.6	9	91	0	55	12	43	0	43	1.42
1024618--1024689	12	6.5	11	77	16	62	38	1	45	13	1.53
1024648--1024720	33	2.2	33	92	0	119	41	1	46	10	1.48
1024617--1024696	42	1.9	42	92	0	133	41	1	43	13	1.52
1024648--1024702	18	3.2	18	70	15	53	41	0	45	12	1.42
1027842--1027912	18	3.6	18	69	20	52	43	2	43	9	1.52
1027809--1027927	42	2.8	42	90	0	184	43	2	45	8	1.47
1033410--1033458	21	2.3	21	92	3	80	18	16	10	55	1.69
1033778--1033809	16	2.0	16	93	0	55	34	12	15	37	1.85
1033782--1033915	48	2.8	49	83	2	198	28	16	15	39	1.89
1039624--1039742	42	2.8	42	89	0	184	8	45	2	43	1.47
1039639--1039709	18	3.6	18	69	20	52	9	42	2	45	1.52
1039648--1039733	24	3.8	24	70	17	76	10	44	2	43	1.51
1050259--1050307	21	2.3	21	92	3	80	18	16	10	55	1.69
1050627--1050658	16	2.0	16	93	0	55	34	12	15	37	1.85
1050631--1050764	48	2.8	49	83	2	198	28	16	15	39	1.89
1056474--1056592	42	2.8	42	89	0	184	8	45	2	43	1.47
1056489--1056559	18	3.6	18	69	20	52	9	42	2	45	1.52
1056498--1056583	24	3.8	24	70	17	76	10	44	2	43	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061550--1061625	12	6.9	11	75	15	52	39	2	48	9	1.49
1061549--1061634	24	3.8	24	72	17	85	41	2	45	10	1.51
1061540--1061658	42	2.8	42	92	0	193	42	2	46	8	1.47
1067142--1067190	21	2.3	21	92	3	80	18	16	10	55	1.69
1067510--1067541	16	2.0	16	93	0	55	34	12	15	37	1.85
1067514--1067647	48	2.8	49	83	2	198	28	16	15	39	1.89
1073355--1073473	42	2.8	42	89	0	184	8	45	2	43	1.47
1073370--1073440	18	3.6	18	69	20	52	9	42	2	45	1.52
1073379--1073464	24	3.8	24	70	17	76	10	44	2	43	1.51
1077810--1077876	12	5.9	11	75	18	66	40	0	46	13	1.43
1077800--1077881	33	2.5	33	91	0	128	45	0	42	12	1.41
1077830--1077909	42	1.9	42	94	0	142	43	0	43	12	1.42
1077829--1077915	18	4.5	18	71	18	59	43	0	44	11	1.40
1077827--1077903	21	3.7	21	73	16	70	44	0	42	12	1.43
1083477--1083520	21	2.1	21	83	8	54	25	31	4	38	1.76
1085327--1085351	13	1.9	13	100	0	50	32	16	16	36	1.90
1087411--1087441	15	2.1	15	93	0	53	12	22	16	48	1.80
1089245--1089289	21	2.1	21	84	8	56	22	20	4	53	1.63
1091516--1091541	13	2.0	13	100	0	52	30	15	15	38	1.88
1092737--1093057	160	2.0	160	91	1	518	38	14	29	17	1.89
1094792--1094862	18	3.6	18	69	20	52	43	2	43	9	1.52
1094759--1094877	42	2.8	42	89	0	175	44	2	44	8	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1100360--1100779	149	2.8	150	78	11	426	37	11	20	30	1.88
1109874--1109953	30	2.7	30	92	3	126	8	45	3	42	1.53
1109899--1109938	21	1.9	21	89	0	62	10	42	2	45	1.51
1111273--1111360	24	3.9	24	70	17	71	10	45	3	40	1.55
1111290--1111369	42	1.9	42	86	0	115	10	43	1	45	1.45
1113014--1113049	16	2.2	16	95	0	63	16	47	8	27	1.75
1113229--1113299	12	6.5	11	76	15	51	39	2	47	9	1.51
1113226--1113332	42	2.5	42	93	0	187	40	2	47	9	1.50
1123322--1123431	42	2.6	42	92	0	184	40	3	46	9	1.53
1128934--1128998	26	2.5	26	100	0	130	38	15	23	23	1.92
1128947--1128994	15	3.5	15	72	21	59	37	12	25	25	1.91
1135493--1135559	12	5.9	11	75	18	57	44	1	41	11	1.50
1135483--1135564	33	2.5	33	89	0	128	48	1	39	10	1.46
1145464--1145489	13	2.0	13	100	0	52	30	15	15	38	1.88
1146198--1146241	21	2.1	21	83	8	54	25	31	4	38	1.76
1148047--1148085	13	3.0	13	96	0	69	38	12	17	30	1.88
1150156--1150186	15	2.1	15	93	0	53	12	22	16	48	1.80
1151990--1152034	21	2.1	21	84	8	56	22	20	4	53	1.63
1154252--1154277	13	2.0	13	100	0	52	30	15	15	38	1.88
1154986--1155029	21	2.1	21	83	8	54	25	31	4	38	1.76
1155018--1155069	25	2.1	25	100	0	104	48	11	3	36	1.58
1155018--1155061	14	3.4	14	75	18	58	47	13	4	34	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1156860--1156898	13	3.0	13	96	0	69	38	12	17	30	1.88
1158967--1158997	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2   3   4   5   6

The End!