Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold112
Parameters: 2 7 7 80 10 50 1000
Length:  1714866

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1240 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1652197--1652234
2
19.0
2
100
0
76
50
0
0
50
1.00
1653001--1653025
3
8.3
3
100
0
50
68
32
0
0
0.90
1665397--1665448
3
17.3
3
95
0
95
32
1
0
65
1.04
1669056--1669094
20
2.0
20
90
10
62
17
5
7
69
1.32
1669108--1669157
22
2.3
21
82
3
64
12
10
6
72
1.28
1669106--1669165
21
2.7
22
79
7
68
10
8
5
76
1.14
1669100--1669165
22
2.9
22
71
13
62
12
7
6
74
1.22
1670050--1670104
13
4.2
13
81
6
58
40
0
0
60
0.97
1675342--1675492
52
2.9
51
88
3
221
32
16
18
32
1.93
1675481--1675505
13
1.9
13
100
0
50
36
16
16
32
1.90
1675550--1675612
33
1.9
33
86
0
90
41
15
9
33
1.80
1683229--1683293
1
65.0
1
81
0
67
89
10
0
0
0.49
1683232--1683292
9
6.9
9
81
14
74
88
11
0
0
0.51
1683231--1683293
11
5.8
11
83
10
76
88
11
0
0
0.50
1683232--1683291
20
3.0
20
90
7
86
88
11
0
0
0.52
1683227--1683293
24
2.8
24
90
2
100
88
11
0
0
0.53
1683229--1683292
33
1.9
33
90
6
103
89
10
0
0
0.50
1684730--1684943
29
7.4
29
79
6
209
30
28
17
23
1.97
1684729--1685092
57
6.2
58
74
12
271
30
28
16
24
1.96
1684730--1685064
88
3.8
87
77
10
277
29
29
16
24
1.97
1684997--1685092
30
3.3
30
80
12
112
36
29
15
18
1.92
1684726--1685092
29
12.5
29
73
13
200
29
28
16
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1685114--1685355
52
4.8
51
77
9
250
22
26
18
33
1.96
1685115--1685298
95
1.9
95
84
6
248
22
26
19
32
1.97
1692429--1692456
14
2.0
14
100
0
56
35
21
14
28
1.92
1692443--1692580
52
2.6
51
86
4
195
31
17
18
32
1.94
1692569--1692593
13
1.9
13
100
0
50
36
16
16
32
1.90
1692634--1692700
33
2.0
33
85
0
89
38
14
11
34
1.84
1693532--1693966
88
4.9
88
86
3
593
37
13
16
32
1.87
1693532--1693965
179
2.4
178
87
3
622
38
13
16
32
1.87
1697532--1697566
10
3.4
10
96
4
61
71
8
0
20
1.11
1697533--1697607
37
2.1
36
80
16
84
73
9
2
14
1.19
1697544--1697634
47
2.0
47
86
6
132
72
8
4
14
1.24
1697544--1697688
43
3.2
47
80
8
149
66
9
6
16
1.41
1697626--1697709
23
3.8
22
72
12
73
61
7
11
19
1.52
1697630--1697699
20
3.3
20
71
11
59
61
8
11
18
1.54
1698035--1698614
174
3.3
170
77
8
476
40
5
5
48
1.48
1698955--1699017
29
2.2
29
85
0
81
53
4
0
41
1.22
1704141--1704189
3
16.3
3
87
8
73
67
2
0
30
1.02
1705614--1705680
33
2.0
33
85
5
91
44
10
28
16
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!