genome.fa.s112.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold112
Parameters: 2 7 7 80 10 50 1000
Length:  1714866

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738193--738235	18	2.2	20	88	8	63	48	0	0	51	1.00
738356--738393	3	12.7	3	100	0	76	34	0	0	65	0.93
740306--740332	14	1.9	14	100	0	54	25	0	0	74	0.83
740913--741008	47	2.0	47	97	0	183	37	11	17	33	1.86
743601--743670	21	3.5	20	73	9	63	57	0	4	38	1.19
743760--743924	38	4.3	37	73	19	140	56	1	0	41	1.11
743759--743887	21	6.3	21	69	16	76	55	1	0	41	1.14
743760--743909	82	1.9	79	83	6	194	55	1	0	42	1.13
743897--743953	18	3.3	17	73	9	53	61	0	0	38	0.96
746744--746800	16	3.5	16	80	9	62	52	14	7	26	1.66
748078--748105	7	4.0	7	100	0	56	42	0	0	57	0.99
750105--750138	13	2.6	13	90	9	52	47	0	0	52	1.00
757066--757111	24	1.9	24	86	0	65	58	0	2	39	1.10
757076--757129	19	2.7	19	83	13	56	61	0	1	37	1.07
760042--760093	14	3.4	14	74	23	50	50	0	3	46	1.20
760275--760352	42	1.9	41	82	7	97	53	1	1	43	1.16
760819--760853	11	3.2	11	100	0	70	45	0	0	54	0.99
760819--760860	22	2.0	20	90	9	66	42	0	0	57	0.99
761149--761178	15	2.0	15	93	0	51	56	0	0	43	0.99
762094--762118	13	1.9	13	100	0	50	72	0	0	28	0.86
763551--763601	19	2.7	18	80	11	66	68	0	3	27	1.07
763549--763595	23	2.0	24	88	12	71	63	0	6	29	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765009--765062	25	2.3	23	76	17	56	20	7	0	72	1.08
765196--765228	1	33.0	1	93	0	57	96	3	0	0	0.20
765474--765504	14	2.3	14	94	5	55	48	0	0	51	1.00
896070--896124	18	3.2	16	83	16	67	60	0	0	40	0.97
896823--896881	16	3.5	18	71	17	54	52	0	0	47	1.00
897195--897244	3	16.7	3	95	0	91	66	2	0	32	1.03
898016--898057	22	1.9	22	85	9	59	59	2	0	38	1.10
898213--898282	25	2.8	25	72	12	72	41	2	0	55	1.14
899548--899573	12	2.2	12	100	0	52	88	0	11	0	0.52
906622--906672	3	17.0	3	100	0	102	66	0	0	33	0.92
908038--908096	10	6.3	10	70	21	56	52	0	0	47	1.00
908066--908098	17	1.9	17	93	0	57	45	0	0	54	0.99
908055--908117	28	2.2	30	83	16	80	44	0	1	53	1.10
908164--908353	103	1.8	103	93	0	326	45	4	5	45	1.45
940912--941036	62	2.0	62	98	0	241	45	14	11	28	1.79
946269--946491	108	2.1	108	93	0	383	19	26	17	36	1.94
951139--951180	16	2.7	16	81	3	50	61	7	7	23	1.47
951189--951225	14	2.7	14	91	4	58	67	2	0	29	1.04
951577--951714	68	2.0	68	98	0	267	36	2	1	58	1.22
955689--955734	17	2.9	16	83	6	58	52	2	0	45	1.13
956602--956677	27	2.8	28	71	18	70	31	1	5	61	1.26
956612--956677	27	2.4	29	80	10	84	28	1	6	63	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
956616--956674	28	2.2	28	81	6	68	27	1	6	64	1.28
957734--957783	22	2.2	24	82	10	61	74	2	2	22	1.03
957761--957859	41	2.4	40	76	17	96	57	3	1	38	1.21
957761--957851	40	2.3	39	79	12	96	57	3	1	38	1.23
957846--957886	20	2.0	20	85	0	55	48	0	0	51	1.00
957870--957932	19	3.1	20	82	15	76	34	0	0	65	0.93
961443--961472	2	15.0	2	100	0	60	50	0	0	50	1.00
961507--961552	18	2.6	18	79	6	58	65	4	0	30	1.12
961507--961552	19	2.6	17	83	10	58	65	4	0	30	1.12
962010--962050	15	2.8	14	88	7	55	41	21	0	36	1.54
964645--964685	19	2.4	17	78	21	50	39	0	0	60	0.96
964947--965003	8	7.4	8	74	20	50	50	1	1	45	1.22
965367--965395	2	14.5	2	100	0	58	48	0	0	51	1.00
965955--966012	25	2.2	25	81	9	62	50	0	0	50	1.00
966940--966978	6	6.5	6	96	0	51	51	7	0	41	1.31
966934--966978	12	3.8	12	87	0	63	51	8	0	40	1.33
966934--966978	4	11.2	4	85	0	54	51	8	0	40	1.33
966934--966978	10	4.5	10	88	0	54	51	8	0	40	1.33
969261--969301	21	1.9	22	85	14	59	17	12	9	60	1.57
969625--969655	2	15.5	2	100	0	62	51	0	0	48	1.00
971659--971701	21	2.1	20	87	12	61	30	0	2	67	1.03
972024--972049	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974485--974528	19	2.4	19	88	3	63	50	2	0	47	1.13
975031--975097	30	2.2	32	89	5	102	52	0	1	46	1.09
975175--975219	17	2.6	17	82	6	56	24	0	0	75	0.80
975347--975376	2	15.0	2	100	0	60	50	0	0	50	1.00
976470--976520	25	2.0	26	84	3	68	52	0	0	47	1.00
978774--978798	1	25.0	1	100	0	50	0	0	100	0	0.00
983174--983208	2	17.5	2	100	0	70	51	0	0	48	1.00
983819--983881	12	5.7	11	77	19	53	26	3	0	69	1.03
983850--983883	3	11.3	3	100	0	68	32	0	0	67	0.91
984162--984219	25	2.3	26	87	3	82	58	1	0	39	1.08
984190--984223	11	3.1	11	86	0	50	55	5	0	38	1.24
984582--984616	5	6.6	5	96	3	52	82	0	0	17	0.66
984770--984824	21	2.7	21	85	2	67	47	0	0	52	1.00
988752--988783	2	16.0	2	100	0	64	50	0	0	50	1.00
988858--988903	23	2.1	23	88	11	71	58	2	0	39	1.10
988874--988931	29	2.0	30	89	3	91	53	1	0	44	1.10
992941--993001	29	2.0	30	81	9	70	60	0	0	39	0.97
994206--994262	20	2.8	20	75	0	60	57	1	5	35	1.31
998566--998698	63	2.1	62	81	10	155	51	0	0	48	1.06
998671--998699	14	2.1	14	93	6	51	72	0	0	27	0.85
999174--999203	15	2.0	15	93	0	51	33	0	3	63	1.11
1000348--1000387	18	2.2	18	90	0	62	72	0	2	25	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000607--1000741	60	2.3	57	76	14	143	45	4	0	49	1.27
1000728--1000771	17	2.5	18	82	14	56	31	2	0	65	1.05
1000742--1000775	17	2.0	17	94	0	59	26	0	0	73	0.83
1001191--1001224	17	1.9	17	88	5	50	55	5	2	35	1.39
1001609--1001637	3	9.7	3	100	0	58	31	0	0	68	0.89
1002844--1002890	15	3.1	15	78	3	58	29	0	0	70	0.88
1003031--1003063	12	2.8	12	90	4	50	51	0	0	48	1.00
1003816--1003841	3	8.7	3	100	0	52	30	0	0	69	0.89
1004176--1004252	31	2.5	30	83	8	93	66	0	1	32	1.00
1004310--1004374	21	3.2	20	75	14	71	40	3	10	46	1.54
1004310--1004374	20	3.2	20	76	18	64	40	3	10	46	1.54
1004902--1004932	16	1.9	16	93	0	53	67	0	3	29	1.06
1005290--1005328	18	2.1	19	90	4	62	69	0	0	30	0.89
1005755--1005811	19	2.9	19	80	14	71	38	0	0	61	0.96
1005755--1005811	20	2.9	19	85	12	71	38	0	0	61	0.96
1006013--1006046	2	17.0	2	93	0	59	0	52	0	47	1.00
1015966--1015991	2	13.0	2	100	0	52	50	0	0	50	1.00
1015969--1016073	8	13.8	8	69	20	64	39	0	1	59	1.09
1016029--1016081	17	3.0	17	86	8	70	33	0	0	66	0.92
1016009--1016086	16	4.9	15	75	19	61	37	0	0	62	0.95
1016381--1016444	21	3.2	19	77	14	58	51	1	0	46	1.10
1019378--1019411	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020188--1020247	27	2.2	27	82	14	70	51	0	0	48	1.00
1020983--1021041	25	2.3	25	83	11	75	44	3	0	52	1.17
1021105--1021156	25	2.1	24	82	10	61	63	0	0	36	0.95
1023365--1023406	21	2.0	22	85	4	59	50	0	2	47	1.14
1023381--1023409	13	2.3	13	94	5	51	58	0	0	41	0.98
1023632--1023679	20	2.3	20	82	3	60	50	2	0	47	1.12
1026278--1026311	14	2.4	14	90	9	52	14	0	17	67	1.23
1032981--1033018	19	2.0	19	90	10	60	39	0	0	60	0.97
1033091--1033132	14	2.9	15	82	7	50	47	2	4	45	1.36
1033517--1033552	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11