genome.fa.s112.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold112
Parameters: 2 7 7 80 10 50 1000
Length:  1714866

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1240 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628378--628431	22	2.5	21	74	11	56	46	1	0	51	1.11
629008--629038	16	1.9	16	93	0	53	54	0	0	45	0.99
631471--631559	37	2.5	37	77	14	96	42	0	2	55	1.12
632578--632633	27	2.1	27	89	0	85	53	12	1	32	1.49
632652--632695	19	2.3	19	92	0	70	43	2	9	45	1.48
632761--632785	7	3.6	7	100	0	50	16	0	0	84	0.63
633070--633100	13	2.4	13	100	0	62	41	0	0	58	0.98
634519--634604	45	1.9	45	95	4	156	32	10	19	37	1.86
640267--640308	11	3.9	11	78	3	50	19	0	9	71	1.13
640251--640310	17	3.5	17	73	13	52	26	0	8	65	1.21
640651--640688	18	2.2	18	90	4	60	34	0	5	60	1.19
643129--643214	43	2.0	42	82	10	104	37	13	20	27	1.91
643802--643857	19	3.0	18	75	15	60	37	5	0	57	1.22
643800--643858	18	3.2	18	81	9	75	35	5	0	59	1.20
643981--644030	21	2.3	23	80	13	61	46	0	0	54	1.00
644566--644721	14	11.4	14	66	17	69	55	0	1	41	1.15
644626--644739	32	3.3	32	75	17	95	57	0	0	41	1.04
644564--644739	72	2.4	70	79	14	164	55	0	1	42	1.14
644640--644698	26	2.2	26	82	11	66	57	0	0	42	0.98
644622--644699	17	4.7	17	76	20	67	56	0	1	42	1.07
644602--644730	16	7.0	18	71	26	85	56	0	1	41	1.14
644648--644740	17	5.3	17	72	22	61	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644648--644740	8	10.6	9	74	21	74	58	0	0	41	0.98
644912--644945	15	2.3	15	90	5	52	55	0	0	44	0.99
645293--645378	25	3.5	25	76	14	74	46	1	0	52	1.08
646401--646435	18	1.9	18	88	0	52	28	2	22	45	1.67
650199--650276	37	2.1	37	87	0	111	38	17	15	28	1.91
650917--650950	14	2.4	14	85	0	50	20	2	0	76	0.92
657116--657157	14	2.9	15	79	13	52	61	0	0	38	0.96
657591--657619	2	14.5	2	100	0	58	51	0	0	48	1.00
658596--658634	20	2.0	20	85	10	53	41	7	0	51	1.31
659171--659238	18	4.1	18	80	16	92	57	0	0	42	0.98
659190--659240	14	3.4	14	75	19	57	54	0	0	45	0.99
660145--660204	31	2.0	30	83	9	77	38	0	3	58	1.15
660261--660313	16	3.2	16	89	2	79	62	0	0	37	0.96
660253--660330	32	2.5	33	85	6	99	62	2	0	34	1.09
660261--660332	16	4.6	16	79	6	76	63	1	0	34	1.03
660702--660747	3	15.3	3	95	0	83	67	2	0	30	1.03
660871--660962	37	2.5	38	80	16	104	44	1	0	54	1.07
665586--665665	27	3.1	24	74	13	70	56	3	3	36	1.35
666128--666197	21	3.0	22	75	20	72	52	0	0	47	1.00
666157--666209	10	5.2	10	78	13	54	50	1	0	47	1.12
666128--666219	47	2.0	47	81	12	109	51	1	0	47	1.07
667949--668018	32	2.3	32	81	16	87	55	1	0	42	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669940--670000	15	3.6	16	74	20	52	44	1	0	54	1.10
669940--670002	18	3.7	16	78	14	63	44	1	0	53	1.10
669940--670002	16	3.8	16	76	15	56	44	1	0	53	1.10
669985--670037	26	2.0	26	89	7	81	45	0	0	54	0.99
670506--670544	19	2.0	20	85	14	55	61	2	0	35	1.10
670472--670551	11	7.5	11	71	18	53	57	2	0	40	1.12
671409--671473	32	2.0	32	82	5	78	55	0	0	44	0.99
671977--672007	3	10.3	3	92	0	53	64	3	32	0	1.09
674987--675044	17	3.2	17	79	13	71	44	3	5	46	1.42
675039--675084	18	2.6	17	86	6	74	67	0	0	32	0.91
675120--675192	15	5.4	14	71	25	68	43	1	5	49	1.34
675515--675557	21	2.0	21	82	8	52	67	2	0	30	1.03
675915--675945	16	2.0	15	93	6	53	35	6	12	45	1.68
676687--676719	2	16.5	2	100	0	66	0	48	0	51	1.00
676719--676754	2	18.0	2	100	0	72	50	0	0	50	1.00
676930--676981	26	2.0	26	100	0	104	30	11	0	57	1.34
677001--677044	2	22.0	2	95	0	79	50	2	0	47	1.13
680685--680713	2	14.5	2	100	0	58	51	0	0	48	1.00
681336--681366	16	1.9	16	93	0	53	35	6	3	54	1.42
687707--687770	19	3.2	20	75	16	71	59	0	0	40	0.97
688208--688248	6	6.7	6	94	5	73	82	0	0	17	0.66
688592--688665	23	3.0	23	80	11	67	47	1	2	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689049--689089	3	13.7	3	100	0	82	68	0	0	31	0.90
689529--689585	22	2.4	23	82	8	62	59	1	1	36	1.18
690412--690451	20	2.0	20	100	0	80	50	5	5	40	1.46
691257--691301	3	15.3	3	95	4	83	31	0	0	68	0.89
691661--691925	109	2.4	109	81	5	297	35	15	14	33	1.88
691940--692233	111	2.7	111	75	11	273	37	14	12	35	1.85
692434--692471	15	2.4	16	82	8	51	47	2	0	50	1.15
692619--692675	21	2.7	20	74	17	53	64	5	0	29	1.15
692779--692816	8	4.8	8	90	0	58	50	10	0	39	1.37
694370--694397	13	2.2	13	100	0	56	53	7	0	39	1.28
695901--695934	17	1.9	17	88	5	50	29	11	11	47	1.76
698314--698344	13	2.5	13	94	5	55	54	6	6	32	1.51
700373--700398	2	13.0	2	100	0	52	50	0	0	50	1.00
701747--701788	15	2.7	15	80	16	50	45	0	0	54	0.99
701812--701861	25	2.0	26	88	4	75	32	10	4	54	1.52
702363--702467	14	6.7	15	71	18	56	57	0	0	40	1.12
702366--702446	34	2.3	36	83	8	105	54	1	1	43	1.16
703994--704054	16	3.9	16	86	2	88	49	4	0	45	1.23
704351--704672	170	1.9	172	85	2	452	43	13	4	38	1.66
704988--705027	19	2.0	21	90	9	66	37	2	0	60	1.11
705547--705584	18	2.1	19	90	5	60	39	0	0	60	0.97
706711--706759	2	24.5	2	100	0	98	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706890--706920	2	15.5	2	93	0	53	48	0	3	48	1.17
708886--708956	27	2.6	27	84	6	81	23	7	21	47	1.75
711639--711708	27	2.6	26	84	13	88	21	7	24	47	1.76
711639--711708	28	2.6	27	86	8	90	21	7	24	47	1.76
711641--711729	28	3.4	27	80	10	87	23	7	22	46	1.78
712297--712334	2	19.0	2	100	0	76	50	0	0	50	1.00
712945--713004	31	2.0	31	86	3	86	55	0	0	45	0.99
712990--713035	23	2.0	23	87	8	67	39	0	0	60	0.97
713250--713295	18	2.6	17	81	18	51	52	0	0	47	1.00
713517--713582	22	3.0	23	79	18	70	56	0	0	43	0.99
717388--717417	9	3.3	9	100	0	60	20	10	20	50	1.76
717679--717746	18	3.6	18	74	9	64	54	0	0	45	0.99
718500--718543	2	22.0	2	100	0	88	50	0	0	50	1.00
723729--723753	8	3.1	8	100	0	50	24	0	0	76	0.80
723848--723880	17	1.9	17	88	11	50	51	3	0	45	1.16
723840--723888	21	2.3	20	80	16	55	55	2	0	42	1.11
723850--723907	28	2.0	30	86	6	84	56	3	0	39	1.16
723848--723908	16	4.0	16	74	22	51	57	3	0	39	1.15
724375--724437	18	3.6	17	85	10	83	33	0	1	65	1.03
724407--724459	19	2.7	19	82	2	52	43	0	1	54	1.11
724375--724480	17	6.4	17	70	21	64	36	0	1	61	1.07
725046--725095	23	2.1	24	85	10	68	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728254--728292	20	2.0	20	90	5	62	48	0	0	51	1.00
734031--734080	24	2.3	20	80	16	55	66	0	0	34	0.92
734605--734649	15	3.2	15	75	12	51	46	2	0	51	1.13
735283--735389	52	2.1	52	87	3	153	19	13	16	50	1.78
736200--736242	22	2.0	22	86	13	63	41	0	4	53	1.21
736301--736330	12	2.5	12	94	0	51	63	0	0	36	0.95
736348--736374	14	1.9	14	100	0	54	59	0	0	40	0.98
736348--736378	14	2.2	14	94	0	53	58	0	3	38	1.15
737371--737424	3	18.0	3	100	0	108	33	0	0	66	0.92
737766--737852	47	1.9	46	81	11	108	29	4	3	62	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11