genome.fa.s122.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold122
Parameters: 2 7 7 80 10 50 1000
Length:  766530

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 524 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196251--196275	13	1.9	13	100	0	50	36	16	16	32	1.90
198570--198609	22	1.9	21	85	10	55	35	7	12	45	1.70
198749--198846	42	2.3	42	94	0	178	41	18	14	25	1.88
203282--203354	20	3.6	20	81	3	101	35	13	19	31	1.91
203300--203375	21	3.7	21	80	3	100	42	11	17	28	1.84
203282--203375	41	2.3	41	98	0	179	39	12	18	29	1.88
203414--203439	13	2.0	13	100	0	52	38	15	15	30	1.88
207502--207532	15	2.1	15	93	0	53	48	16	22	12	1.80
209549--209627	20	3.7	21	75	15	72	26	13	15	44	1.84
209614--209652	13	3.0	13	96	0	69	30	17	15	35	1.91
212095--212167	20	3.6	20	81	3	101	35	13	19	31	1.91
212113--212188	21	3.7	21	80	3	100	42	11	17	28	1.84
212095--212188	41	2.3	41	98	0	179	39	12	18	29	1.88
212227--212252	13	2.0	13	100	0	52	38	15	15	30	1.88
215952--216089	40	3.5	40	86	0	195	39	10	17	33	1.83
217618--217651	3	11.3	3	100	0	68	32	0	0	67	0.91
219849--219875	5	5.4	5	100	0	54	81	0	0	18	0.69
221026--221366	145	2.3	144	79	8	334	35	5	7	51	1.55
222264--222291	3	9.3	3	100	0	56	32	0	0	67	0.91
222364--222408	22	2.0	22	100	0	90	31	8	8	51	1.64
222423--222473	22	2.2	23	82	6	59	47	1	0	50	1.12
223011--223051	3	13.7	3	94	0	73	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223051--223089	3	13.0	3	100	0	78	0	33	0	66	0.92
223560--223596	19	2.0	18	89	5	56	0	18	8	72	1.08
228287--228320	2	17.0	2	100	0	68	50	0	0	50	1.00
231965--231999	2	17.5	2	100	0	70	51	0	48	0	1.00
233372--233419	17	2.8	17	81	12	62	54	0	0	45	0.99
233372--233462	11	7.8	11	78	16	69	57	0	0	42	0.99
233369--233479	24	4.6	24	74	13	95	57	0	0	42	0.98
233758--233796	16	2.5	15	84	12	51	2	35	0	61	1.10
236149--236216	28	2.4	28	85	5	82	52	1	8	36	1.42
236844--236876	9	3.3	10	87	12	50	69	3	0	27	1.03
240980--241026	17	2.7	18	78	21	55	44	4	2	48	1.34
243646--243815	78	2.1	81	81	5	195	34	11	24	28	1.91
243676--243927	128	1.9	130	84	5	341	36	9	23	30	1.87
243855--244087	81	2.9	81	78	5	247	35	11	24	28	1.90
244738--244762	13	1.9	13	100	0	50	36	16	8	40	1.77
248887--248943	20	2.8	20	89	5	80	47	7	12	33	1.68
251631--251682	20	2.6	20	81	6	61	42	13	15	28	1.85
251582--251796	113	1.9	112	83	4	281	39	16	15	28	1.89
251829--251936	54	2.0	54	90	0	171	33	9	12	44	1.75
351990--352043	19	2.8	20	88	5	83	38	11	11	38	1.76
354575--354774	93	2.2	93	82	3	233	33	15	8	44	1.75
354780--354907	67	1.9	67	85	4	179	32	19	9	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355121--355199	39	2.0	39	85	0	104	41	11	3	43	1.59
355182--355221	20	2.0	20	95	0	71	35	12	5	47	1.63
356693--356723	10	3.1	10	95	0	53	87	0	12	0	0.55
357838--357957	50	2.4	50	85	2	159	30	15	25	29	1.95
357972--358270	77	3.8	77	80	8	336	33	13	25	27	1.94
357926--358320	154	2.5	158	86	8	543	33	13	26	26	1.94
358252--358421	51	3.3	49	81	5	169	31	12	28	28	1.93
360920--360945	13	2.0	13	100	0	52	38	15	15	30	1.88
360932--360973	21	2.0	21	100	0	84	28	19	9	42	1.82
360990--361089	32	3.2	31	90	5	148	33	19	13	35	1.90
361047--361071	13	1.9	13	100	0	50	32	16	16	36	1.90
361129--361206	21	3.7	21	91	1	120	39	16	8	34	1.80
361969--362007	20	2.0	20	85	10	53	35	5	5	53	1.45
362558--362613	20	2.7	20	76	15	60	67	3	3	25	1.22
364830--364872	2	21.5	2	100	0	86	51	0	48	0	1.00
367470--367516	22	2.2	21	84	3	58	51	8	14	25	1.71
367476--367518	21	2.0	22	90	4	70	51	4	13	30	1.62
369395--369436	22	2.0	21	90	4	66	50	4	4	40	1.45
372416--372471	21	2.7	21	94	0	94	26	14	14	44	1.83
374329--374702	34	10.6	34	77	8	246	39	22	9	29	1.85
374329--374702	103	3.5	103	74	12	319	39	22	9	29	1.85
374341--374667	69	4.6	73	78	6	269	39	23	8	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374329--374618	103	2.8	103	80	9	327	38	23	7	30	1.82
374341--374700	73	5.0	71	76	10	272	39	22	9	28	1.85
377883--377949	23	3.0	23	85	12	79	70	0	26	2	1.02
379258--379298	16	2.6	16	96	0	73	41	14	2	41	1.59
383315--384018	154	4.6	153	83	5	585	39	15	17	27	1.89
383336--384099	154	5.0	153	77	10	494	40	16	16	27	1.89
387502--387631	67	1.9	68	82	4	165	43	13	25	17	1.86
387693--387800	41	2.7	40	71	7	101	41	11	28	18	1.85
387767--388075	162	1.9	162	80	1	359	38	13	28	19	1.89
387626--388289	82	8.1	82	72	8	300	40	13	25	19	1.89
388495--388762	41	6.6	39	70	10	117	38	14	25	20	1.91
388630--388812	82	2.2	82	80	1	197	41	15	22	20	1.89
388659--388879	41	5.4	40	72	11	119	42	14	24	19	1.88
388665--389021	82	4.4	82	77	7	311	41	13	24	21	1.88
388665--389044	80	4.7	80	74	10	290	42	13	24	20	1.88
389545--389904	76	4.7	76	77	7	363	44	12	17	25	1.84
389562--389903	152	2.2	153	83	4	440	44	12	16	25	1.83
390012--390880	60	14.5	61	73	7	404	49	16	14	18	1.80
390012--390880	120	7.2	118	72	8	515	49	16	14	18	1.80
390133--390754	180	3.4	176	72	9	502	48	15	15	19	1.81
390482--390595	61	1.9	60	85	1	156	54	17	13	14	1.71
390012--390822	361	2.2	360	80	3	916	49	16	15	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390664--390759	30	3.2	30	67	14	72	45	19	17	16	1.85
391318--391465	44	3.4	44	71	5	138	45	10	16	27	1.79
391283--391746	88	5.3	88	82	1	491	44	14	16	24	1.85
392214--392434	112	2.0	112	84	1	291	38	14	15	31	1.88
394224--394256	6	5.7	6	92	3	50	75	0	15	9	1.03
395402--395427	13	2.0	13	100	0	52	30	15	15	38	1.88
395466--395541	21	3.7	21	82	3	109	28	18	11	40	1.86
395486--395559	20	3.7	20	81	3	103	31	20	13	35	1.91
395466--395559	41	2.3	41	100	0	188	29	19	12	38	1.89
396187--396230	21	2.1	21	91	8	72	27	31	6	34	1.83
396124--396291	82	2.0	82	98	0	327	25	30	5	37	1.80
398093--398131	13	3.0	13	96	0	69	35	15	17	30	1.91
398117--398192	20	3.5	20	77	16	71	43	14	15	26	1.85
401954--401998	21	2.1	21	84	8	56	22	20	4	53	1.63
404213--404238	13	2.0	13	100	0	52	30	15	15	38	1.88
404277--404352	21	3.7	21	82	3	109	28	18	11	40	1.86
404297--404370	20	3.7	20	81	3	103	31	20	13	35	1.91
404277--404370	41	2.3	41	100	0	188	29	19	12	38	1.89
405265--405653	164	2.4	163	78	9	368	32	7	15	44	1.74
406021--406406	155	2.5	157	77	5	399	24	16	20	38	1.92
411290--411573	153	1.9	153	83	4	376	43	17	13	25	1.85
414913--415160	20	11.3	20	66	24	110	41	12	17	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414863--415160	91	3.3	91	90	1	463	41	11	17	29	1.84
415719--415831	48	2.4	48	92	0	190	33	18	28	19	1.95
415796--415866	35	2.0	35	97	0	133	36	19	26	16	1.94
415748--415914	83	2.0	83	91	0	271	34	16	28	20	1.94
415831--416019	48	3.9	48	92	0	315	35	14	28	21	1.93
415719--415962	131	1.9	131	92	0	407	34	16	28	20	1.94
415831--416053	96	2.4	96	86	2	317	34	14	28	21	1.93
416175--416529	28	12.5	28	86	3	467	22	17	31	29	1.96
416175--416529	143	2.5	143	90	1	561	22	17	31	29	1.96
416177--416529	171	2.1	171	88	2	521	22	17	31	28	1.96

Tables:   1   2   3   4   5